KEGG   Entamoeba histolytica: EHI_099850
Entry
EHI_099850        CDS       T00238                                 
Symbol
173.t00021
Name
(RefSeq) replication factor C familiy protein
  KO
K10756  replication factor C subunit 3/5
Organism
ehi  Entamoeba histolytica
Pathway
ehi03030  DNA replication
ehi03410  Base excision repair
ehi03420  Nucleotide excision repair
ehi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ehi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EHI_099850 (173.t00021)
   03410 Base excision repair
    EHI_099850 (173.t00021)
   03420 Nucleotide excision repair
    EHI_099850 (173.t00021)
   03430 Mismatch repair
    EHI_099850 (173.t00021)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ehi03032]
    EHI_099850 (173.t00021)
   03036 Chromosome and associated proteins [BR:ehi03036]
    EHI_099850 (173.t00021)
   03400 DNA repair and recombination proteins [BR:ehi03400]
    EHI_099850 (173.t00021)
DNA replication proteins [BR:ehi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    EHI_099850 (173.t00021)
  DNA Replication Termination Factors
   ELG1-RFC complex
    EHI_099850 (173.t00021)
Chromosome and associated proteins [BR:ehi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    EHI_099850 (173.t00021)
DNA repair and recombination proteins [BR:ehi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     EHI_099850 (173.t00021)
  Check point factors
   HRAD17(Rad24)-RFC complex
    EHI_099850 (173.t00021)
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 Rep_fac_C AAA_22 DNA_pol3_delta Rad17 RuvB_N AAA_14 AAA_assoc_2 DUF815 AAA_18 ResIII AAA_11 AAA_24 AAA_5 AAA_16 AAA_19 Mg_chelatase AAA_7 NB-ARC AAA_30 nSTAND3 TniB ATPase_2 PhoH DUF87 TIP49 RNA_helicase AAA_33 AAA_3 IstB_IS21 bpMoxR AAA_2 AAA_28 AAA_25 SLFN-g3_helicase AAA_17
Other DBs
NCBI-GeneID: 3405587
NCBI-ProteinID: XP_651283
UniProt: C4M6G5
AA seq 325 aa
MSLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL
CGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQNAL
RRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGMEID
EDAKKSIIEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLSSP
YLESFTVVDNLIKAGLSLNDIIIRVVPKLIEGKLISVLDKTARIQCLYQLSLIEQALSIG
GNERTQTAAFVAAFQLLQTSSPMLS
NT seq 978 nt   +upstreamnt  +downstreamnt
atgtcacttccgtgggtggaaaagtaccgtccttcaactacagatggtatatttggtcat
gaatatattcttgagtctttaaaacaatttattaatgctaaccaaatacctcatatgctt
ttttatggtccacctggcacaggtaaaacaacaacagctttggctattgtaaaacaatta
tgtggaactaaattctctgcattagtattagaactaaatgcatcagatgaaagaggaatt
gatgttgttagagatcaaatcaaatcctttgcatcaacacgtactttatatactaattgt
actaaatttattatattagatgaaagtgataaattaactaaagatgctcaaaatgcactt
cgaagaacattagaacaattttctgcaaattgtagatttattttcatttgtaatgaagtt
catttaataaccccagctattcaatcacgttgtgcaaaaatgagatttggtccattatct
ccagatgctttaacaaaaattgttgaaaatattacaatgaaagaaggtatggaaattgat
gaagatgcaaaaaaatctatcatagaaatatcaaaaggagatgctagaagtattattaat
actttacaggcactgtcaatgacttgtaaacaaattactaattcaactttatacacaatg
gttggattacctactccagcacaaattgatgatattatttcagagttattaagttcacct
tatcttgaatcttttactgttgtagataatttaattaaagctggactttctttaaatgat
attatcattcgtgtggtacctaaattaattgaagggaaattaatttctgtcttagataaa
actgctagaattcaatgtctttaccaactttctcttattgaacaagcattatctattggt
ggaaatgaacgaactcaaacagcagcttttgtagcagcctttcaattattacaaacttca
tctccaatgttaagttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (37)   
   Pfam (37)   
All databases (62)   

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