KEGG   Entamoeba histolytica: EHI_142090
Entry
EHI_142090        CDS       T00238                                 
Symbol
200.t00008
Name
(RefSeq) RNA polymerase subunit Rpb5
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ehi  Entamoeba histolytica
Pathway
ehi03020  RNA polymerase
ehi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ehi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EHI_142090 (200.t00008)
  09124 Replication and repair
   03420 Nucleotide excision repair
    EHI_142090 (200.t00008)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ehi03021]
    EHI_142090 (200.t00008)
   03400 DNA repair and recombination proteins [BR:ehi03400]
    EHI_142090 (200.t00008)
Transcription machinery [BR:ehi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     EHI_142090 (200.t00008)
  RNA polymerase III system
   RNA polymerase III
     EHI_142090 (200.t00008)
  RNA polymerase I system
   RNA polymerase I
     EHI_142090 (200.t00008)
DNA repair and recombination proteins [BR:ehi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      EHI_142090 (200.t00008)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N tRNA_int_endo
Other DBs
NCBI-GeneID: 3405068
NCBI-ProteinID: XP_650770
UniProt: C4LW54
AA seq 204 aa
MESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKE
NDATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVK
WEALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQ
RGDVVKIIRKSETAGRYVTYRAVF
NT seq 615 nt   +upstreamnt  +downstreamnt
atggagagtgtaactcatatctatcgagcatggaaaaccgtattagaaatgcttagggac
agaggatatatcacaagtgaagaagatcataacacaacactcgaaggattcaaagaacga
ttttataaaggaggagaaggagtagatcataaagaattaactataaaagtagtaaaagaa
aatgatgcaactgatggtattattgttttctttgcagaaggagtttcattgaagacagat
gttttaggaaaatatttaacagaagttgaatcagaacatgttaaacgtgctattattgtt
tatagaggaaaactttcatctccagttaaacaaatgatggaacaaccaagagaagtaaaa
tgggaagcattacttgaagatgaattaattgttaatgttactcaccatattcttgttcca
caacatattcttttaagtcctgaagaaaaacaagaattattaaagaagtatcaagttaaa
gaatcacaacttcctcgattattaacatctgatccaattagtaagtattatggatttcaa
cgtggtgatgttgttaaaattatccgtaaaagtgaaactgcaggaagatacgtaacatat
cgtgctgtcttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (44)   

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