KEGG   Emiliania huxleyi: EMIHUDRAFT_558132
Entry
EMIHUDRAFT_558132 CDS       T02915                                 
Symbol
RFC5
Name
(RefSeq) putative replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
ehx  Emiliania huxleyi
Pathway
ehx03030  DNA replication
ehx03410  Base excision repair
ehx03420  Nucleotide excision repair
ehx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ehx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EMIHUDRAFT_558132 (RFC5)
   03410 Base excision repair
    EMIHUDRAFT_558132 (RFC5)
   03420 Nucleotide excision repair
    EMIHUDRAFT_558132 (RFC5)
   03430 Mismatch repair
    EMIHUDRAFT_558132 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ehx03032]
    EMIHUDRAFT_558132 (RFC5)
   03036 Chromosome and associated proteins [BR:ehx03036]
    EMIHUDRAFT_558132 (RFC5)
   03400 DNA repair and recombination proteins [BR:ehx03400]
    EMIHUDRAFT_558132 (RFC5)
DNA replication proteins [BR:ehx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    EMIHUDRAFT_558132 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    EMIHUDRAFT_558132 (RFC5)
Chromosome and associated proteins [BR:ehx03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    EMIHUDRAFT_558132 (RFC5)
DNA repair and recombination proteins [BR:ehx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     EMIHUDRAFT_558132 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    EMIHUDRAFT_558132 (RFC5)
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 Rad17 AAA_16 AAA_22 AAA_14 AAA_5 bpMoxR AAA_11 AAA_24 RuvB_N AAA_19 DUF815 AAA_30 AAA_7 TniB DEAD AAA_3 AAA_25 AAA_18 ATPase_2 Mg_chelatase ResIII FtsK_SpoIIIE TIP49 AAA_28 nSTAND3
Other DBs
NCBI-GeneID: 17254977
NCBI-ProteinID: XP_005761307
JGI: Emihu1_558132
UniProt: R1BGJ3
Position
Unknown
AA seq 354 aa
MEAQDMDVSADAPVDKTAQMHAAQADLLPWVEKYRPKDMSELVSHDEIISTITRLIDAGK
LPHLLLYGPPGTGKTSTILACARRMYGKRFASMVLELNASDDRGIDVVREQIKEFASTRQ
MWTSMPKLIVLDEADNMTSPAQMALRRVIEKYVSNVRFCLICNYASKIMPALQSRTTRFR
FAPLTDEQAIGRTQHVAEAEGVRAAGGGVEACVALGRGDMRRCLNLLQSTHMSFGLVSEE
NVYRCAGQPTPADTDAIFRSLMEEDFSTALSSVWSRLQDRVALQGDRGVALQDVLTELHH
LVLALEAKPLPKASLVASLADAEERLSVGTSERLQLAGLVGLFQLARPHLGVAG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atggaggcacaggacatggacgtctccgccgacgcgccggtggacaagacggcgcagatg
catgcggcccaggcagacctgctaccgtgggtggagaagtaccgaccaaaggacatgtcg
gagctggtgtcgcacgacgagataatctccacgatcacgcggctcatcgacgccggcaag
ctcccccacctgctgctgtacggcccgcccggcactggcaagacgtcgacgatcctcgcg
tgcgcgcgccgaatgtacggcaagcggttcgcgagcatggtgctcgagctgaacgcgtcg
gacgaccgcgggatcgacgtggtgcgcgagcagatcaaggagttcgcctcgacgcgccag
atgtggacctcgatgcccaagctgattgtgctcgacgaggcggacaatatgacgagcccc
gcgcagatggcgctgcggcgcgtgatcgagaagtacgtgtcgaacgtgcgcttctgcctg
atctgcaactacgcgtccaagattatgcccgcgctgcagtcgcgcaccacccgcttccgc
ttcgcacccctcaccgacgagcaggcgatcggccgcacccagcacgtcgctgaggccgag
ggggttcgcgccgcgggcgggggcgtggaggcgtgcgtggccctcgggcgcggcgacatg
cgccgctgcctcaacctgctgcagtcgacccacatgagcttcggcctcgtctctgaggag
aatgtctaccgctgcgccggccagccgacgccggccgacacggacgcgatcttccgctcg
ctgatggaggaggacttcagcacggcgctctcctcggtgtggtcgcggctgcaggaccgc
gtcgcgctgcagggcgaccgcggcgtcgcgctgcaggacgtgctgacggagttgcaccac
ctcgtcctcgccctcgaggccaagcccctgcccaaggcgtcgctcgtcgcctcgctcgcc
gacgccgaggagcggctctcggtcggcacgtcggagaggctgcagctcgccggcttggtc
ggcctcttccagctcgcgcgccctcacctcggcgtcgcgggctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (95)   
   KEGG ORTHOLOGY (1)   
   RefGene (90)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (28)   
   Pfam (28)   
All databases (135)   

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