KEGG T01997: ECOK1

Escherichia coli O18 K1 H7 IHE3034 (ExPEC): ECOK1_2241

Entry

ECOK1_2241        CDS       T01997

Symbol

sbcB

Name

(GenBank) exodeoxyribonuclease I

K01141

exodeoxyribonuclease I [EC:3.1.11.1]

Organism

eih Escherichia coli O18:K1:H7 IHE3034 (ExPEC)

Pathway

eih03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:eih00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    ECOK1_2241 (sbcB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:eih03400]
    ECOK1_2241 (sbcB)
Enzymes [BR:eih01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     ECOK1_2241 (sbcB)
DNA repair and recombination proteins [BR:eih03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     ECOK1_2241 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     ECOK1_2241 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ECOK1_2241 (sbcB)

SSDB

Motif

Pfam:

Exonuc_X-T_C RNase_T

Other DBs

NCBI-ProteinID:

ADE92439

Position

2300782..2302209

AA seq 475 aa
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ
PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF
YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA
HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL
VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS
ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD
YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

NT seq 1428 nt +upstreamnt +downstreamnt
atgatgaatgacggtaagcaacaatctacctttttgtttcacgattacgaaacctttggc
acgcaccccgcgttagatcgccctgcacagttcgcagccattcgcaccgatagcgaattc
aatgtcatcggcgaacccgaagtcttttactgcaagcccgcggatgactatttaccccag
cctggagcagtattaattaccggtattaccccgcaggaagctcgggcgaaaggagaaaac
gaagccgcatttgccgcccgtattcactcgctttttaccgtaccgaagacctgtattctg
ggctacaacaatgtgcgtttcgacgacgaagtcacacgcaacgttttttatcgtaatttc
tacgatccttacgcctggagctggcagcatgataactcgcgctgggatttactggatgtt
atgcgtgcctgttatgccctgcgcccggaaggaataaactggcctgaaaatgatgacggt
ctaccgagctttcgccttgagcatttaaccaaagcgaatggtattgaacatagcaacgcc
cacgatgcgatggctgatgtgtacgccactattgcgatggcgaaactggtaaaaacgcgt
cagccacgcctgtttgattatctctttacccatcgtaataaacacaaactgatggcgttg
attgatgttccgcagatgaaacccctggttcacgtttccggaatgtttggggcatggcgc
ggcaataccagctgggtggcaccgctggcgtggcatcctgaaaatcgcaatgccgtaatt
atggtggatttggcaggagacatttcgccattactggagctggatagcgacacattgcgc
gagcgtttatataccgcaaaagccgatcttggcgataacgccgccgttccggttaagctg
gtgcatatcaataaatgtccggtactggcccaggcgaatacgctacgcccggaagatgcc
gaccgactgggaattaatcgtcagcattgcctcgataacctaaaaattctgcgtgaaaat
ccgcaagtgcgtgaaaaagtggtggcgatattcgcggaagccgaaccgtttacgccttca
gagaacgtggatgcacagctttataatggctttttcagtgacgccgatcgtgcagcaatg
aaaattgtgctggaaaccgagccgcgtaatttaccggcactggatatcacttttgttgat
aaacgaattgaaaaactgttgttcaattatcgagcgcgcaacttcccggggacgctggat
tatgccgagcagcaacgctggctggagcaccgccgccaggtcttcacgccagagtttttg
cagggctacgctgatgaattgcagatgctggcacaacagtatgccgatgacaaagagaaa
gtggcgctgttaaaagcgctttggcagtacgcggaagagatcgtctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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