KEGG T02104: KO11

Escherichia coli KO11FL: KO11_21375

Entry

KO11_21375        CDS       T02104

Symbol

hupB

Name

(GenBank) transcriptional regulator HU subunit beta

K03530

DNA-binding protein HU-beta

Organism

ekf Escherichia coli KO11FL

Brite

KEGG Orthology (KO) [BR:ekf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ekf03032]
    KO11_21375 (hupB)
   03036 Chromosome and associated proteins [BR:ekf03036]
    KO11_21375 (hupB)
   03400 DNA repair and recombination proteins [BR:ekf03400]
    KO11_21375 (hupB)
DNA replication proteins [BR:ekf03032]
Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    KO11_21375 (hupB)
Chromosome and associated proteins [BR:ekf03036]
Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    KO11_21375 (hupB)
DNA repair and recombination proteins [BR:ekf03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      KO11_21375 (hupB)

SSDB

Motif

Pfam:

Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 SeleniumBinding HU-CCDC81_euk_1

Other DBs

NCBI-ProteinID:

AFH19238

Position

complement(4543703..4543975)

AA seq 90 aa
MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG
RNPQTGKEITIAAAKVPSFRAGKALKDAVN

NT seq 273 nt +upstreamnt +downstreamnt
gtgaataaatctcaattgatcgacaagattgctgcaggggctgatatctctaaagctgcg
gctggccgtgcgttagatgctattattgcttccgtaactgaatctctgaaagaaggggat
gatgtagcactggtaggttttggtacttttgccgttaaagagcgtgctgcccgtactggc
cgcaacccgcagaccggtaaagagatcaccatcgctgctgctaaagtaccgagcttccgt
gcaggtaaagcactgaaagacgcggtaaactaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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