KEGG   Elizabethkingia miricola: VO54_03022
Entry
VO54_03022        CDS       T03757                                 
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
elb  Elizabethkingia miricola
Pathway
elb03410  Base excision repair
elb03430  Mismatch repair
elb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:elb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VO54_03022 (recJ)
   03430 Mismatch repair
    VO54_03022 (recJ)
   03440 Homologous recombination
    VO54_03022 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:elb03400]
    VO54_03022 (recJ)
DNA repair and recombination proteins [BR:elb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     VO54_03022 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     VO54_03022 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VO54_03022 (recJ)
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 DSPc SIS_2
Other DBs
NCBI-ProteinID: AJW64474
Position
complement(3229602..3231311)
AA seq 569 aa
MMQRWIYKPTPSEDVIDSISSSLGFGYLASKILVMRGVDSYQKAREFFKPKASDIHNPFL
MADMQKAVERIATAIENGEKILVFGDYDVDGTTAVALMYLYLSKICDKKYLDFYIPDRNL
EGYGVSTEGIDYAKENGFSLIIALDCGIKSTDKVDYANSLGIDFIICDHHLPGDEIPKAA
AVLDPKRKDCEYPYKDLSGCGVGYKLCQALNTIYKISDHELQDLTDLLAISIAADIVPIT
GENRVFAKMGLNKLRKTKRQGLKILIPYEKLQNFTISNIVFEIAPKINAAGRISHGKAAV
ELMIAENAKQAHLIADQIVNLNDERKELDSNMTQQAIDQVIETKQEETFSTIVYQSEWNK
GVIGIVASRLIELYYKPTLVFTDGTNGEMVASARSVADFDLHNALDVCSDLFLKFGGHRA
AAGLSMEKKHFEAFKTKFEETVKNSIKEHQKTPSIEIDAEISLNDLTNDFFQFHRWLAPF
GPENMKPVLVIKNARVSGHVRKIGKQSSHLKFNIVQDSSRKGIECLAFKMGEHATDFKTK
TFDIAFTIEENHWKDNLTYYLNVRDVIFH
NT seq 1710 nt   +upstreamnt  +downstreamnt
atgatgcaacgatggatctacaaaccgacaccttccgaagacgtaatagatagtatcagc
tcttcgctgggatttggttatttagcatccaaaattctggttatgcgtggggtagattcc
taccagaaagccagagaattcttcaagccaaaagcttccgatatacacaatccttttctg
atggcagatatgcaaaaagcagtggagagaattgccacggctatcgaaaacggagaaaaa
atattagtctttggagattatgatgtagacggtacaactgccgttgcattaatgtacctg
taccttagcaaaatctgcgacaagaaatatttagatttttatattcctgacagaaatctg
gagggctatggtgtctccactgaggggattgattatgcaaaagaaaatggcttttcatta
attatcgcattagactgtggaatcaagtccacagacaaagttgactatgccaatagtctg
ggaattgactttataatttgtgaccaccaccttcccggtgatgagatcccgaaagcagca
gcagttcttgaccccaaacgaaaagactgtgaatatccttataaggatcttagcggctgt
ggtgttggctataaactttgccaggcattgaataccatctataaaatttcggaccacgaa
ttacaagatctaaccgatcttttggcgataagtattgctgcagatattgttcctataact
ggtgaaaacagagtattcgccaaaatggggctcaataaactgcgtaaaacaaaaagacag
ggattaaagattttaattccttacgaaaagcttcagaacttcacaatctcgaatattgtt
tttgaaattgctcctaaaataaatgctgccggcagaatttctcacgggaaagctgctgta
gagctaatgattgcagaaaatgctaaacaagcccacctcatcgctgatcagattgttaat
ctaaacgatgagagaaaggaattggacagtaatatgactcagcaggctatagatcaggtt
attgagacaaaacaagaggaaacattcagtacaattgtttatcagtctgaatggaataag
ggtgtaattggtattgttgcatccagactaatcgaattatattacaagcccactttggta
tttaccgatgggactaacggtgaaatggtagcttctgctcgttctgtagcagatttcgat
cttcacaatgcattagatgtatgttcagatttatttttaaaatttggaggacaccgtgct
gcagcagggctgtctatggagaaaaaacattttgaagcatttaaaacgaagttcgaagag
acagtaaaaaactctataaaagagcatcagaaaacgccaagcattgaaattgatgctgaa
atttcgctgaacgatttaactaatgattttttccagttccaccgatggctggctcctttt
ggtcctgaaaatatgaaacctgttttggtaataaaaaatgcccgagtaagcggtcatgta
aggaaaattggaaagcaaagttctcatttgaaatttaatattgttcaggattcttccaga
aaaggaatagaatgcttagccttcaaaatgggggaacatgccaccgacttcaaaactaaa
acttttgatattgcatttactattgaagagaatcactggaaagataatcttacttactat
ctcaatgtaagagatgttattttccattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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