KEGG   Escherichia coli clone D i2: i02_0534
Entry
i02_0534          CDS       T02004                                 
Symbol
hupB
Name
(GenBank) transcriptional regulator HU subunit beta
  KO
K03530  DNA-binding protein HU-beta
Organism
eld  Escherichia coli clone D i2
Brite
KEGG Orthology (KO) [BR:eld00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eld03032]
    i02_0534 (hupB)
   03036 Chromosome and associated proteins [BR:eld03036]
    i02_0534 (hupB)
   03400 DNA repair and recombination proteins [BR:eld03400]
    i02_0534 (hupB)
DNA replication proteins [BR:eld03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    i02_0534 (hupB)
Chromosome and associated proteins [BR:eld03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    i02_0534 (hupB)
DNA repair and recombination proteins [BR:eld03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      i02_0534 (hupB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 SeleniumBinding HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: AER83125
Position
536902..537174
AA seq 90 aa
MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG
RNPQTGKEITIAAAKVPSFRAGKALKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaataaatctcaattgatcgacaagattgctgcaggggctgatatctctaaagctgcg
gctggccgtgcgttagatgctattattgcttccgtaactgaatctctgaaagaaggggat
gatgtagcactggtaggttttggtacttttgccgttaaagagcgtgctgcccgtactggc
cgcaacccgcagaccggtaaagagatcaccatcgctgctgctaaagtaccgagcttccgt
gcaggtaaagcactgaaagacgcggtaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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