KEGG   Escherichia coli W: WFL_22050
Entry
WFL_22050         CDS       T02101                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ell  Escherichia coli W
Pathway
ell02024  Quorum sensing
ell03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ell00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WFL_22050 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    WFL_22050 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ell03019]
    WFL_22050 (hfq)
   03036 Chromosome and associated proteins [BR:ell03036]
    WFL_22050 (hfq)
Messenger RNA biogenesis [BR:ell03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     WFL_22050 (hfq)
Chromosome and associated proteins [BR:ell03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    WFL_22050 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AFH14049
Position
4654001..4654309
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccgtctcgtccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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