KEGG   Elizabethkingia sp. JS20170427COW: FGE20_09170
Entry
FGE20_09170       CDS       T06442                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
elt  Elizabethkingia sp. JS20170427COW
Pathway
elt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:elt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FGE20_09170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:elt03019]
    FGE20_09170
   03009 Ribosome biogenesis [BR:elt03009]
    FGE20_09170
Enzymes [BR:elt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FGE20_09170
Messenger RNA biogenesis [BR:elt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FGE20_09170
Ribosome biogenesis [BR:elt03009]
 Prokaryotic type
  rRNA helicases
   FGE20_09170
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: QCX53888
UniProt: A0A5B7UHK7
Position
complement(2050190..2051854)
AA seq 554 aa
MNLFTETDLSPEILKAIGEIGYESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP
ILGMIDDSSRKIQLLVLCPTRELCLQIAKDIKIYSKYLPNIKSVAVYGGSSINDQIKQLR
EKPQIIVGTPGRVIDLINRKALDFSNIHWLVLDEADEMLSMGFKDDLETIISETPETKQT
LLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVVSYRQKKEALKRLIDSN
PNHYTIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNINILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGRDGVSIALIKPEEGRKLKMIKSQ
SKIEIVEKFIPKGEDIIKAQVAGVFEQLLSQHEDVFEFDNALIPDLSAFTKEELVKQLLQ
FQLKDMALYYKDRNDLAEVKFSKEDRDRDRGGRRDRDRGRDRDRGRDRKPRRKNENMVRF
FFNLGKRDQLKKVDVLDIINQSTKKSGKKADIGDIEILEKFSFFEIEKNFKDELMRNISN
KKFKGREMRIEVAN
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgaatttatttaccgagaccgatttaagtcctgaaattttgaaggctatcggcgaaata
ggatacgaaagtccgacagaaatccaaaaacaaaccattccttttatctctaccgatatc
cgtgaccttattgcgttggcacaaacgggtacagggaaaaccgcagctttttccttacct
atcctagggatgatcgatgacagcagtagaaaaatccaattattggtgctttgccctact
cgcgagctttgcttacaaatagcaaaagacataaaaatttattccaaataccttcctaac
atcaaatctgtagcggtttatggaggaagcagtattaatgatcaaatcaaacaacttcgt
gagaaacctcaaattattgtaggtactccagggcgtgttatcgatttaatcaaccgcaaa
gctttagatttttctaatatccattggttagttcttgatgaagcagacgaaatgctttct
atgggctttaaagatgacttagaaaccatcattagcgaaactcctgagacgaaacaaacc
cttcttttctctgcaaccatgagcaaagaagtggaaagaatttctaaaaattaccttact
aaacctcacagaatttctgtaggttctatcaacgaggtaaaaaagaatatcaaacatgaa
tactatgtggtaagttaccgtcagaaaaaagaagctttaaaacgacttatcgacagtaac
cctaaccactataccattattttctgtagaaccagaatggaaacccaagaagttgctgac
ttccttatgcaaaacggatatgctgcagacgctcttcatggggacctttctcaagcacag
agagacactgtaatgaaaaaattcagacttaaaaacatcaacatcttggttgctactgat
gttgctgcaagaggtctggatgtagattccttaactcacgtaatccacttctctttacca
gacgatccagaagtatttgtacaccgtagtggtagaacaggtagagcgggaagagatggt
gtttctatcgcccttatcaaacctgaagagggtagaaaactgaaaatgattaagagccaa
agtaaaattgagattgtagaaaaatttatccctaaaggtgaagacatcatcaaagctcaa
gtagcaggagtttttgagcaattactatctcaacacgaagatgtttttgaattcgacaat
gctcttatcccagatttatctgccttcacaaaagaggaattggtaaaacaacttttacaa
ttccaactaaaagatatggctctatattacaaagatagaaatgatcttgccgaagttaaa
ttcagcaaagaagatagagatagagaccgtggtggaagaagagacagagatcgcggtaga
gatagagaccgtggaagagacagaaaaccacgcagaaaaaatgaaaatatggttcgattc
ttttttaatttaggaaaaagagatcagctgaaaaaagtagatgtacttgatatcatcaac
caatctactaaaaaatcaggtaagaaggcagatatcggagatatagaaattctagaaaaa
ttctctttcttcgaaattgagaaaaactttaaagatgagttgatgagaaacatctccaac
aagaaatttaaaggcagagaaatgcgaattgaagttgctaactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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