KEGG   Escherichia marmotae: C1192_13540
Entry
C1192_13540       CDS       T05353                                 
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ema  Escherichia marmotae
Pathway
ema03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ema00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C1192_13540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ema03019]
    C1192_13540
   03009 Ribosome biogenesis [BR:ema03009]
    C1192_13540
Enzymes [BR:ema01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     C1192_13540
Messenger RNA biogenesis [BR:ema03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C1192_13540
Ribosome biogenesis [BR:ema03009]
 Prokaryotic type
  rRNA helicases
   C1192_13540
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 AAA_22 DRTGG
Other DBs
NCBI-ProteinID: AUT28011
UniProt: A0A370V8N9
Position
complement(2628759..2630642)
AA seq 627 aa
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPQTERRGGGRGVGGERREGGRNFSGERREGGRGDGR
RFSGERREGRAPRREESTGRRRFGGDA
NT seq 1884 nt   +upstreamnt  +downstreamnt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtatcccacatctg
ctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattc
tctttacctctgctgcaaaatcttgatcctgagctgaaagcaccacagattctggtgttg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccctttacggcggccagcgttatgacgtgcaattacgt
gccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctg
aaacgtggcactctggatctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgccctgacatc
agccagagctactggactgtctggggtatgcgcaaaaacgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaa
gtggctgaagcccttgagcgcagcggttacaatagtgctgccctgaacggtgacatgaac
caggcactgcgtgagcagactctggaacgtctgaaagatggtcgtctggatatcctgatc
gcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgcgggtcgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgtactatgaaactgaccattccagaagtagaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaatttgctgctaaagtacagcagcaactggaaagcagcgatctg
gatcaataccgtgcactgctgagcaaaattcagccgactgcagaaggtgaagagctggat
ctcgaaactctggctgccgcactgctgaaaatggcacagggcgaacgtactctgatcgtg
ccgccagatgcgccgatgcgtccgaaacgtgagttccgtgaccgtgatgatcgtggtccg
cgcgatcgtaacgaccgtggcccgcgtggtgaccgtgaagatcgtccgcgtcgtgaacgt
cgcgatgttggcgatatgcagttgtaccgcattgaggtgggtcgtgatgatggcgttgaa
gttcgtcatatcgttggcgcaattgctaacgaaggtgacatcagcagccgttacatcggt
aacatcaagctgtttgcttctcactccaccatcgaattgccgaaaggtatgccgggtgaa
gtgctgcaacactttacgcgtacccgcatcctcaacaagccgatgaacatgcaactgctg
ggcgatgcacagccgcaaactgaacgtcgtggtggtggtcgtggtgtcggtggcgagcgt
cgtgaaggcggtcgcaacttcagcggtgaacgccgtgaaggtggtcgtggtgatggtcgt
cgcttcagtggcgaacgtcgcgaaggccgtgcaccgcgtcgtgaagagtctaccggtcgt
cgtcgtttcggtggcgatgcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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