KEGG T01097: ECO111

Escherichia coli O111 H- 11128 (EHEC): ECO111_2310

Entry

ECO111_2310       CDS       T01097

Symbol

rnd

Name

(GenBank) ribonuclease D

K03684

ribonuclease D [EC:3.1.13.5]

Organism

eoi Escherichia coli O111:H- 11128 (EHEC)

Brite

KEGG Orthology (KO) [BR:eoi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:eoi03016]
    ECO111_2310 (rnd)
Enzymes [BR:eoi01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     ECO111_2310 (rnd)
Transfer RNA biogenesis [BR:eoi03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    ECO111_2310 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 RNAseD_HRDC_C HRDC

Other DBs

NCBI-ProteinID:

BAI36174

Position

complement(2309370..2310497)

AA seq 375 aa
MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI
TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS
MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL
DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR
EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEEALPQPMLNLMDM
PGYRKVFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE
LMAEALHNLLQEYPQ

NT seq 1128 nt +upstreamnt +downstreamnt
ttgaattaccaaatgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgt
gcctttccggcgatagccctggatactgaatttgttcgtacgcgcacttattacccgcag
ctggggttgattcaacttttcgatggcgagcatctggcgctaattgatcctctcgggatc
accgactggtcaccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccat
gcaggcagtgaagatctggaagtgttcctcaatgtctttggcgaattaccacaacccttg
attgacacgcaaatccttgctgccttctgcggacgcccgatgtcatggggtttcgcttcc
atggtggaagagtattccggcgttacgctggacaagagtgaatcgcgcaccgactggctg
gccagaccgctgaccgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgtta
ccgatcaccgccaagcttatggtagaaacggaggcctccggctggctacctgcggcgctg
gatgaatgccgcctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctgg
cgtgatatcaccaatgcctggcagttacgcacacgccaactggcctgtctgcaactgtta
gccgactggcgactgcgcaaggcgcgagagcgtgatctggcggtgaactttgtcgtgcgt
gaagagcatttgtggtcggtcgcgcgttatatgccgggaagtttaggcgaactggacagc
ctgggtttatccggtagcgaaatccgctttcacggtaaaacgctgctggcgctggtggaa
aaagcgcagacattgccggaagaggccttaccgcagccgatgcttaacctgatggacatg
cctggttatcgtaaagtgtttaaagcgattaagtcgctgattactgacgtgagcgaaacg
cataagatcagcgccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactgg
cactggaaactgaaaccgcagaacaatttgccggagctgatttccggctggcgtggtgag
ctgatggcggaagcattacacaatttattgcaggaatatccgcagtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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