KEGG   Erythrobacter sp. KY5: CD351_00850
Entry
CD351_00850       CDS       T05511                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
erk  Erythrobacter sp. KY5
Pathway
erk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:erk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CD351_00850 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:erk03021]
    CD351_00850 (rpoC)
   03400 DNA repair and recombination proteins [BR:erk03400]
    CD351_00850 (rpoC)
Enzymes [BR:erk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CD351_00850 (rpoC)
Transcription machinery [BR:erk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CD351_00850 (rpoC)
DNA repair and recombination proteins [BR:erk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CD351_00850 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23 RPOC_hybrid YqfD ApbA_C
Other DBs
NCBI-ProteinID: AWW72968
UniProt: A0A2Z4JW18
Position
complement(182705..186982)
AA seq 1425 aa
MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWYLKSL
PSRIGLLLDIQLKQLERILYFESYVVIEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAD
IGAEAVKVMLMDLDLEQEREDLLEELATTKSALKPKKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERQEKTPEYLENEDGSKVEKLPRF
ADMAEVHHALETKAVTLHTKILARVPQADEDGNIVMKRFETTPGRMLIGECLPKNHKVPY
DIINRLLTKKDIGDVIDEVYRHTGQKDTVLFADAIMVLGFRNAFKAGISFGKDDMIIPDA
KIPLVEETKSLVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMEEIKAQPIDDD
GKQAQINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYF
NSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEDDCKTENALEMRAIVQGGSVIA
SLGERILGRTVAEDILNAATDEVIVKAGTLIDEPMVKLIEEAEVQSAKIRSPLVCESDQG
VCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAIS
DGKIELRDMPTITDKKGRILSLARNGEIAVIDAEGREREMHKVPYGTVLMFKHGAKVKEG
DRLAEWDPFTLPIITEQSGVVKYQDLVEGMTLEEQTDDATGIAQRVVTENRATGRKKKEE
LRPRMTLLGEGQTDADETEAQRYMLAPGTTLSVEDGQQVEAGDILARASREAAKTRDITG
GLPRVAELFEARLPKDMSVIAKISGKIEFVREYKAKRKIAIVPEEGDAVEYLIPKTKVID
VQEGDFVKKGDTLISGSPNPHDILEVMGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIV
RQMLQKVEITNGGDTVLLPGEQVDREEMDEANAKLGKGKQPAEGTPILLGITKASLQTRS
FISAASFQETTRVLTQASVEGKKDTLIGLKENVIVGRLIPAGTGAGMNRMRVTATSRDAA
LKAQWKKQQDALAAENASEPEPAADAVPSEEAMKAAMGGSGDAAE
NT seq 4278 nt   +upstreamnt  +downstreamnt
atgaacgaactgaccaaattcaccaaccagctggctaagccggaaaccttcgaccagatc
cagatcggcatcgcctcgccagagcgcatccgttcgtggtctttcggcgagatcaagaag
ccggagaccatcaactaccgcacgttcaagcctgagcgtgacggcctgttctgtgcgcgc
atcttcggtccggtgaaggactacgaatgcctgtgcggcaaatacaagcgcatgaagtac
aagggcgtcgtgtgcgaaaagtgcggcgttgaagtcaccgtcaccaaggtgcgccgtgag
cgtatgggccacatcgagctcgctgctcctgtcgctcacatctggtatctgaagtcgctg
ccttcgcgcattggcctcttgctcgacatccagttgaagcagcttgagcgcatcctctac
ttcgaaagctatgtcgtgatcgagccgggtctgaccccgcttgagaaattccagctgctg
accgaggacgaactgctcgaagcgcaggacgaatatggcgaagacgccttctctgccgat
atcggtgccgaagcagtcaaggtcatgctgatggatctcgaccttgagcaggagcgtgaa
gaccttctggaagagctcgcgaccaccaagtccgcactcaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcatcgattcgggcaaccgtcccgaatggatgatcctc
gaagtgatcccggtcatcccacccgaactgcgcccgttggtgccgctggacggtggccgt
ttcgcgacgtccgatctcaacgatctctatcgccgcgtgatcaaccgtaacaaccgtttg
aagcggctcattgagctgcgcgcgccggacatcattgtccgtaacgaaaagcgtatgctt
caggaagccgttgatgcgctgttcgacaatggtcgccgtggccgcgtcatcacgggtgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaaccttctgggtaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggatatcctggatgaagtcatccgcgagcac
ccggttctgctgaaccgcgctccgacgcttcaccgtctcggcattcaggcgttcgagcct
gtgctgatcgaaggaaaggccatccagcttcacccgctcgtctgctcggccttcaacgcc
gactttgacggtgaccagatggcggttcacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggttctgggtctctattacctctcgatggaacgtcaggaa
aagacgcctgagtacctcgagaacgaagatggctcgaaggtcgagaagctgccgcgcttt
gccgacatggccgaagtgcaccatgcgctcgaaaccaaggctgtcacgctgcacacgaag
atcctcgcccgcgttccgcaggccgatgaggatggcaacatcgtgatgaagcgcttcgag
acgacgccgggccgtatgctgatcggcgagtgtctgcccaagaaccacaaggtgccctac
gacatcatcaaccgccttctcaccaagaaggatatcggtgacgtaatcgacgaggtgtat
cgtcacacggggcaaaaggacaccgtgctgttcgccgacgccatcatggtgcttggcttc
cgcaacgcgttcaaggccggcatctccttcggtaaggatgacatgatcattcctgacgcg
aagattccgttggtcgaagaaaccaagagcctcgttgctgactatgagcagcagtatcag
gacggtctcatcacccagcaggaaaagtacaacaaggtcatcgacgcctggagccgttgc
ggcgaccaggtggccgacgccatgatggaggagatcaaggcgcagccgatcgacgacgac
ggcaagcaggcgcagatcaactcgatctacatgatgagccactcgggtgcgcgtggttcg
ccagcgcagatgaagcagctcgccggtatgcgcggcctgatggccaagccgtcgggtgag
atcatcgagaccccgatcatctcgaacttcaaggaaggcctgaccgttcttgaatacttc
aactcgacccacggcgctcgtaaaggcctcgcggataccgcactcaaaacggcaaactcg
ggttatctgacccgccgtctggtcgacgtgtcgcaggactgcgtcatcgtcgaagatgac
tgcaagaccgagaacgcgcttgaaatgcgtgcgatcgttcagggcggtagtgtcatcgct
tcgctgggtgagcgtatccttggtcgtacggttgccgaagacatcctcaacgcagccacc
gacgaagtgatcgtcaaagccgggacgctgatcgatgaaccgatggtcaagctgatcgag
gaagccgaagttcagtccgcaaagatccgttcgccgctcgtttgcgagagcgatcagggt
gtctgcgcgacctgctacggccgtgaccttgcgcgcggtactccggtgaatatcggcgaa
gctgtcggcgttatcgctgcacagtcgatcggtgagccgggcacgcagctgaccatgcgt
accttccacatcggtggtgcggcgcagctcaacgaaacctcgcatcttgaagccatctcg
gacggcaagatcgaacttcgtgacatgccgacgatcaccgacaagaagggccgcatcctc
tcgctcgcccgtaacggtgagatcgccgtgatcgacgccgagggccgtgagcgtgaaatg
cacaaggtgccttacggtaccgtgctcatgttcaagcatggtgcgaaggtgaaggaaggc
gaccgtctcgctgagtgggacccgttcacccttccgatcatcaccgagcaatcgggcgtc
gtgaagtatcaggacctggtcgaaggcatgacgctcgaagagcagactgacgatgcaacc
ggtatcgctcagcgtgtggtgaccgaaaaccgcgcaaccggccgcaagaagaaggaagag
ctgcgtccgcgcatgactcttctcggcgaaggtcagaccgatgccgacgaaaccgaagcg
cagcgctacatgctcgctccgggcacgacgctttcggtcgaggatggtcagcaggtcgag
gccggtgacattcttgcacgtgcttcgcgtgaagccgccaagacccgcgacatcaccggt
ggtctgccgcgtgttgctgaactgttcgaggcgcgtctgccgaaggacatgtcggtcatc
gccaagatttcgggcaagatcgaattcgttcgcgaatacaaggcgaagcgcaagattgcg
atcgtgcccgaggaaggtgatgcagtcgagtacctgatccccaagaccaaggtgatcgac
gtgcaggaaggcgacttcgtgaagaagggtgacaccctgatttccggttcgcccaacccg
cacgacatcctcgaagtcatgggcgtcgaggcactggccgaatatctcgtcaacgagatt
caggaagtctaccgactgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtt
cgccagatgctgcagaaggttgagatcaccaatggcggcgacaccgtactgcttccgggc
gaacaggttgatcgcgaagaaatggacgaagccaatgccaagctcggcaagggcaagcag
cccgctgaaggcacgccgatcctgctgggcatcaccaaggcgtcgctgcagacccgcagc
ttcatctcggcagcctcgttccaggaaacgacgcgcgttctcacccaggcctcggtcgag
ggcaagaaggacacgctgatcggtctgaaggaaaacgtgatcgtgggccgtctcatcccc
gccggtaccggcgcgggcatgaaccggatgcgcgtcaccgcgaccagtcgcgacgctgcg
ctcaaggctcagtggaagaagcagcaggatgcgctcgccgcagaaaatgcgtccgagcct
gagccagcagccgacgcggttccttcggaagaagcgatgaaggcagccatgggcggctct
ggagacgcagccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (22)   

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