KEGG   Edwardsiella tarda FL6-60: ETAF_0448
Entry
ETAF_0448         CDS       T02091                                 
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
etd  Edwardsiella tarda FL6-60
Pathway
etd02020  Two-component system
etd02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:etd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ETAF_0448
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ETAF_0448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:etd03021]
    ETAF_0448
Transcription machinery [BR:etd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ETAF_0448
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR
Other DBs
NCBI-ProteinID: ADM40572
UniProt: A0A0H3DRE1
Position
complement(521044..522501)
AA seq 485 aa
MQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQLEPNDEADGDSADDE
RVQDDADARDDDDPLDTRDALEQREMPDELPLDASWDEIYTAGTPSGTGTDYHDDELPVF
QGETTQTLQDYLMWQVELTPFSETDLAIATAIVDAVDDTGYLTASLEEILESLGDEHALP
EEVEAVLKRIQRFDPVGVAARDLRDCLLVQLSQFAPDTPYLNEARSIVDRHLDLLGNHDF
RNLMRSTKLKEEVLKEAMQLIQSLDPRPGLSINTGESDYVIPDVLVHKHQGRWVVELNQD
SVPRLHINQRYAALGAQARSDSDSQFIRSNLQEAKWLIKSLESRNDTLLKVSRCIVEQQQ
AFFEHGAESMKPMVLADIAQQVEMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTEDG
GEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLADQGIMVARRTVAKYRESLSIPPSNQ
RKQLV
NT seq 1458 nt   +upstreamnt  +downstreamnt
ttgcaactcagactcagccagcagctggccatgacgccacagctgcaacaggctatccgc
ctgctgcagctctctacgctggagctacagcaagagatccagcaggcgctggaaagtaac
ccgctgctggagcaactggagccgaatgacgaagccgacggcgatagcgccgacgacgag
cgcgtgcaggatgatgccgacgcacgcgatgacgacgacccgcttgatacccgcgatgcg
ctagaacagcgcgaaatgccggatgagctgccgctggacgccagctgggatgaaatttac
accgccggcaccccctcaggaacaggaaccgactaccacgacgacgaactgccggtgttt
cagggggaaacgacccagaccctgcaggattacctgatgtggcaggtcgagcttaccccc
ttcagcgaaacggatctggccattgcgaccgccatcgtggatgccgtcgatgacaccggc
tacctcacggcctcgctggaggagatcctggagagcctcggcgatgagcacgcgctgccg
gaggaggtcgaagccgtcctaaagcgcattcagcgtttcgatcccgtcggggttgccgcc
cgcgacctgcgagactgcctgctggtgcagctctcccagtttgcgccagataccccctat
ttaaacgaggcgcgcagcattgtcgatcgccatctcgatctgctgggcaatcacgatttc
cgaaatctgatgcgttcgactaagctaaaggaagaggtgctcaaggaggcgatgcagctc
attcagagcctcgacccgcggccagggctctcgattaataccggcgagtccgactacgtt
atccccgacgtgctggtccataagcaccagggacgctgggtagtcgagctcaatcaggac
agcgtcccgcgcctgcacattaaccagcgctacgcggcgctgggcgcccaggcacgcagc
gacagcgatagccagtttatccgcagcaatctgcaggaggccaagtggctgattaagagc
ctggaaagccgtaacgataccctgctgaaggtatcccgctgtatcgtcgaacagcagcag
gcatttttcgagcacggcgcagagtcgatgaagcccatggtgctggccgacatcgcgcag
caggtagagatgcatgagtcgacgatttcccgcgtgacgacgcagaagttcctgcacagc
ccgcgggggatctttgaactgaagtatttcttctccagccacgtcaataccgaggatggt
ggcgaagcctcctccacggcgatccgggcactggtgaagaaactgatagcggcggaaaat
ccggcgaagcctctgagcgacagcaaacttaccaccctgctggcggatcagggtatcatg
gtcgcccggcgtaccgttgcaaaataccgagagtctttgtccattccaccgtctaaccag
cgtaagcagctggtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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