KEGG T05887: 114066222

Empidonax traillii (willow flycatcher): 114066222

Entry

114066222         CDS       T05887

Symbol

TRMT2B

Name

(RefSeq) tRNA (uracil(54)-C(5))-methyltransferase homolog isoform X1

K15331

tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]

Organism

etl Empidonax traillii (willow flycatcher)

Brite

KEGG Orthology (KO) [BR:etl00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:etl03016]
    114066222 (TRMT2B)
Enzymes [BR:etl01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.35  tRNA (uracil54-C5)-methyltransferase
     114066222 (TRMT2B)
Transfer RNA biogenesis [BR:etl03016]
Eukaryotic type
  tRNA modification factors
   Methyltransferases
    114066222 (TRMT2B)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 MTS Methyltransf_4 Methyltransf_11 Ubie_methyltran Methyltransf_32 Methyltransf_15 Methyltransf_12 PrmA Cons_hypoth95 AviRa Methyltransf_23 DREV TPMT UPF0020

Other DBs

NCBI-GeneID:

114066222

NCBI-ProteinID:

XP_027756555

Position

Unknown

AA seq 466 aa
MALCCLLRPPRWHLRSPPLWERSLATATTGKGKKKAREGCSPPEPSWEDRLANAVTPLWR
LPYQEQLQVKYESQRKVLQTLASRLEELGIDAQKPGGLCCPLQPVVPSPIINGYRNKSTF
SVNRGPDGNPKTVGLYVGTGKARNIVCVKANHLENMPPKHKQVAQCYEEFICASPLDSCI
LFHTGGHWRELVVRTTSRGHTMAIVTFHPQELGQEALAAQKALLKEFFTCGPGAVCALTS
LYFQESTMTRCSHEQSPYQLLQGEPHIFEELCGLKFRISPDAFFQVNMAGAEVLYQAVGK
LCQASGDTVLLDICCGTGTIGLSLARQVSKVIGVEVVEKAIEDARWNAAFNGISNCEFHS
GKAEAVLPQLLASWEDARPLVAVVNPSRAGLHYRVVRAIRNCVSIRRLLYISCKPEGEAM
RNFLELCCPPDPRKKLTGEPFAPVLAVPFDLFPHTVHCELVLLFTR

NT seq 1401 nt +upstreamnt +downstreamnt
atggctctgtgctgcctgttgagacccccgcgctggcacctccgatcgccgccgctctgg
gagcgcagcctggcgacagcgacaacggggaaagggaagaaaaaggccagggagggatgc
agcccgccagaaccgtcctgggaggacaggttagcaaacgcagtgactccactgtggaga
cttccctaccaagagcagctgcaggtgaagtatgaaagccagaggaaggttttgcagaca
ctggcatctcgtcttgaggagctgggcatagatgcacagaaacctggtgggctctgctgt
cctctccagcctgtggtcccttcacccatcattaacggctaccgaaacaaatctactttc
tctgtgaaccgaggaccggatgggaaccccaaaactgtggggttgtatgtgggaactggc
aaagcaagaaatattgtctgtgtgaaagccaaccacctggagaacatgcccccaaaacac
aaacaagtagcccagtgctatgaagagttcatctgtgcttcccccctggattcctgcatc
ctcttccacacgggcgggcactggcgggagctcgtggttcggaccaccagccgtggccac
accatggccatcgtcaccttccacccccaggagctgggccaggaggccctggctgctcag
aaagcgctgctcaaggagttcttcacgtgtggacctggggcagtctgtgccttgacttca
ctttatttccaagagagcaccatgacacgctgctcccacgagcagtctccctaccagctg
ctccagggggagcctcacatcttcgaagaactgtgcggcctcaagtttcgcatctctcca
gatgcctttttccaagtgaacatggctggagcagaagttctgtaccaggcagttgggaag
ctctgtcaggcttcaggggacactgtcctcctcgacatctgctgtgggacaggcacaatt
ggtctctccctggctcgccaggtgtccaaggttatcggtgtggaggtggtggagaaggca
atagaggatgccaggtggaacgcggcgttcaacgggatctcaaactgtgagtttcacagt
gggaaggcagaggccgtgttgccacaactcctggcgtcgtgggaggacgcccggccgctc
gtcgctgtggtgaacccatctcgggctgggctacattacagggtcgtgcgggccatccgg
aattgcgtgtccatccgcaggctgctctacatctcctgcaagccggagggcgaagccatg
aggaactttctggagctgtgctgcccccctgacccacggaagaagctgacaggagagcca
tttgcccccgtgttggcagttccttttgacctgttccctcatactgttcactgtgagctg
gtgctgctgttcacccgctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (29)   

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