KEGG T00949: ECSP

Escherichia coli O157 H7 TW14359 (EHEC): ECSP_5279

Entry

ECSP_5279         CDS       T00949

Symbol

rnr

Name

(GenBank) exoribonuclease R, RNase R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

etw Escherichia coli O157:H7 TW14359 (EHEC)

Pathway

etw03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:etw00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ECSP_5279 (rnr)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:etw03019]
    ECSP_5279 (rnr)
   03016 Transfer RNA biogenesis [BR:etw03016]
    ECSP_5279 (rnr)
Enzymes [BR:etw01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ECSP_5279 (rnr)
Messenger RNA biogenesis [BR:etw03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ECSP_5279 (rnr)
Transfer RNA biogenesis [BR:etw03016]
Prokaryotic type
  tRNA degradation factors
   ECSP_5279 (rnr)

SSDB

Motif

Pfam:

RNB OB_RNB CSD2 S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind OB_Dis3 MetOD2 RNA_pol_Rbc25 Sucrose_synth YqfQ

Other DBs

NCBI-ProteinID:

ACT74959

Position

5291641..5294082

AA seq 813 aa
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLMLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE

NT seq 2442 nt +upstreamnt +downstreamnt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggtagaactgcacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgc
gcgatggagcgcgatggtcaactggtctttactcgtcgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaagggcgtaaagatgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggctcagccgctgggtgctgaccgtaaaggtcgtcgtgaagcgcgt
attgtccgcgtactggtgccaaaaaccagccagattgttggtcgctactttaccgaagcg
ggcgtcggctttgtggttcctgacgatagccgtctgagcttcgatatcttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggttgttgaactgacccaacgcccg
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtgctgggcgacaatatgggcacg
ggcatggcggttgatatcgctctgcgtacccatgaaattccgtacatctggccgcaggct
gttgagcaacaggttgctgggctgaaagaagaagtgccggaagaagcaaaagcgggccgt
gtcgatttgcgcgatttaccgctggtcaccattgatggcgaagacgcccgtgactttgac
gatgcggtttactgcgagaaaaaacgcggcggcggctggcgtttatgggtcgcgattgct
gacgtcagctactatgtgcgtccgccaacgccgctggacagagaagcgcgtaaccgtggt
acgtcggtgtacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggt
ctgtgctcgctcaatccgcaggtagaccgcctgtgtatggtgtgcgagatgacggtttcg
tcgaaaggccgcctgactggctacaaattctacgaagcggtgatgagctctcacgcgcgt
ctgacctacaccaaagtctggcatattctgcagggcgatcaggatctgcgcgagcagtac
gccccgctggttaagcatctcgaagagttgcataacctctataaagtgctggataaagcc
cgtgaagaacgcggcgggatctcatttgagagcgaagaagcgaagttcattttcaacgct
gaacgccgtattgaacgtatcgaacagactcagcgtaacgacgcacacaagttaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagcgaaagaaccg
gcactgttccgtattcacgacaagccgagcaccgaagcgattacctctttccgttcagtg
ctggcagagctggggctggaactgccgggcggtaacaagccggaaccgcgcgactacgcg
gagctgctggagtcggttgccgaccgtcctgatgcagaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgtggtcactttggcctggcattg
cagtcctatgcgcactttacttcgccgattcgtcgttatcctgacctgatgctgcaccgc
gccattaagtatctgctggcgaaagagcaggggcatcagggcaacaccactgaaaccggt
ggctaccattattcgatggaagagatgctgcaattgggtcagcactgttcgatggcggaa
cgtcgtgccgacgaagcaacgcgcgatgtgtctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtaatttccagcgtcactggctttggcttcttc
gtccgtctggacgacttgttcattgatgggctggtccatgtctcttcgctggacaatgac
tactatcgctttgaccaggtagggcaacgcctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgtcgaagcggttaatatggacgagcgcaaaatc
gactttagcctgatctccagcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgag
aaagcgaaaaaaggcgatgcaggtaaaaaaggcggcaagcgtcgtcaggtcggtaaaaag
gtaaactttgagccagacagcgccttccgcggtgagaaaaaaacgaagccgaaagcagcg
aagaaagacgcgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagctgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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