KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10000743mg
Entry
EUTSA_v10000743mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03013  Nucleocytoplasmic transport
eus03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    EUTSA_v10000743mg
   03015 mRNA surveillance pathway
    EUTSA_v10000743mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10000743mg
Enzymes [BR:eus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     EUTSA_v10000743mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     EUTSA_v10000743mg
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     EUTSA_v10000743mg
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD SLFN-g3_helicase UvrD-helicase nSTAND3 Helicase_RecD Viral_helicase1 PhoH AAA_16 SRP54 ATPase AAA_22 Ribosomal_S13_N AAA AAA_32
Other DBs
NCBI-GeneID: 18016219
NCBI-ProteinID: XP_006398395
UniProt: V4LJ67
Position
Unknown
AA seq 1202 aa
MDSQQSDLFETASQPDTVPDAYTFLEFNSQGDSEFDYPEFRSPTAWPTPSDSISIVDPSD
RGGGGAAADHHSEASSPSSLSASAGNGGKVGRGGVGASGGVSCSSQVDALATGMGNLNFE
EAGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKD
MNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLE
KPGVDDEPQPVQTKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKR
VAYFVFPKEENELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVP
IDVNHGFCVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRR
FGVFGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMSKQGQGQVLVCAP
SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL
KDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQ
ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKPIRLQV
QYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISAS
GTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGAGIIGNDNYG
SGNADRRGSRGRAGGSYMPSGPPNGARLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPV
GAAPQPGNHGFGAGRGSSVGGHLPHQQATQHNVGTIGPNLNFPLDSPNSQPSPGGPLSQP
GYGSQAFRDGFMGGISQDFLGDDFKSQGSHVPYNMAEFSTQASQGGYAVDYATQGAHGAF
PGNFMNQNSQGGYSRFGGSNEFMSQEYMAHGGAQGLFTQAGFIDSSQDDGQQHPFGVNQW
RI
NT seq 3609 nt   +upstreamnt  +downstreamnt
atggattctcaacagagcgatctctttgagacggcatcgcagccagacacggtgcccgac
gcgtatacctttttggaattcaattctcaaggtgattccgagttcgattacccagagttc
cgatcaccgacggcatggccgaccccgtctgattccatctccatcgtcgacccttccgat
cgcggcggaggaggagctgccgcggatcatcattccgaggcttcgtcaccgtcttccctt
tctgcaagtgccgggaatggcggcaaagtgggacgtggtggagttggggcaagtggcggt
gttagttgtagcagccaggtcgatgcattggccacgggtatgggaaatttgaactttgag
gaggctggagacgatgatggtttcgattatggtaagaatgatttcacggagcacgcgtgt
aagtattgtggtatctcgaacccagcttgcgtggttagatgtaatgtggcgtcctgtagg
aagtggttctgcaattcaaggggtaacacctccggctcgcatatcgtgaatcacctggtt
cgagcaaaacacaaggaagtttgtctccatagagacagtccgctaggggaaacaattctc
gaatgctacaactgtgggtgtcgaaatgtctttcttctcggtttcatctcggcaaagaca
gacagtgttgtcgttcttctctgtagagatccttgtttaaatgtaaatgccttgaaggat
atgaactgggacctaagtcagtggtgtcccttgattgacgacaggtgtttcctcccttgg
cttgttaaggtcccatcagagcaggaacaattgagggcacgccaaattagtgcacagcaa
ataaataagatagaagaattatggaagacaaatccggatgctacccttgaggaccttgaa
aaacctggtgtagatgatgaacctcagcctgttcaaaccaagtatgaagatgcatatcag
tatcaaaatgtgtttgcacctcttattaagctcgaagcagattatgacaagatgatgaaa
gagtctcaaagcaaggaaaacctcacagttcggtgggatattggtcttaacaagaagcgc
gttgcatacttcgtcttcccaaaggaggaaaatgaattgcgattggtgcctggtgatgaa
ctacgtcttcgctactcaggagatgctgctcatccagcttggcaatcagttgggcatgtg
atcaagctaactgcacaagaggaggttgctcttgaactccgagctaatcagggagttcca
attgatgtgaaccatggtttctgtgttgattttgtttggaaaagtacaagctttgatcga
atgcagggagcaatgaagaattttgctgtagatgaaacaagtgtgagtggttatatttac
catcagttattgggacatgaagttgaggcccagatggtccgaaacacactacctcgacgt
tttggagtttttggtcttccagaactgaatgcatctcaggttaatgcggtgaagagtgtc
cttcagaagcccatcagcttgattcaaggtccacctggcacaggcaaaactgtgacttct
gctgcaattgtgtatcacatgtcaaaacagggccagggacaggtcctcgtttgcgcccca
agcaatgttgctgtcgaccaactagcggaaaaaattagtgctactggtttaaaggttgtt
cgcctttgtgcaaagtcaagggaagctgtaagttctcctgtagagcatttgactcttcac
taccaggtacggcatcttgacacatctgagaagagcgaactgcataagctacagcagttg
aaagatgaacaaggtgagctgtcaagcagtgatgaaaagaaatacaaaaatttgaaacga
gctacagaacgcgagataacccagagtgctgatgtcatttgctgcacttgtgttggtgct
gcggatcttcggttgtcaaattttagatttagacaggtacttattgatgagtctactcaa
gctacagaacctgagtgccttattcctttggtcctcggggtaaagcaggttgttctcgtt
ggtgatcattgtcagcttggccccgtcattatgtgcaagaaagcagctcgtgctggcttg
gcgcagtctctctttgaacgccttgtgactcttggtattaaaccaattagattgcaggtt
caatatcgtatgcatccagctttgtccgagtttccatccaatagcttctatgaaggaaca
ctacagaatggagtcacaattattgaaaggcaaacgacagggattgatttcccatggcct
gtgcctaaccggcccatgtttttctatgtccagctggggcaagaggagatcagtgctagt
ggaacgtcatatttaaatagaaccgaggctgctaatgtggagaaacttgtgaccgctttc
ttaaagagtggagttgtccctagtcagattggagtgataactccatacgagggacagagg
gcatacattgttaattacatggcaagaaatggttctctccgacaacaactttacaaggaa
attgaggttgctagtgttgattcttttcaaggaagagaaaaagattacatcatattgtcc
tgcgttagaagcaacgagcatcagggcattggatttcttaatgatccacggaggctcaac
gttgcacttacacgtgctcgttatggaattgttattcttggaaacccgaaggttcttagt
aaacagcctctgtggaatggcttgctgacacattacaaggaacacgagtgcttggttgag
ggacctcttaataatttaaagcagagcatggtacagtttcagaaaccaagaaagatttac
aatgatcgaagactattttatggtggtggggctggcataattggaaatgacaattatggt
tcgggtaatgctgatagaagaggcagccgtggaagggctggtggctcttatatgccttct
gggccacctaatggtgctagactacacccagctggctacccaatacctagggtaccactt
tcaccatttcctggtggtcctccttctcagccatacgctattccaactcgtggacctgtt
ggtgctgctccccaacctggaaaccacggttttggtgctggtcgtggaagttcagtcggt
ggccaccttccccaccaacaagccacccagcataatgttggaactattggccctaattta
aactttcctcttgatagtccaaatagccagccttcacctggtggtccgctatcccaacct
ggatatggtagccaagcgttcagggatggatttatgggtggcatatctcaggatttcttg
ggtgatgattttaagagccagggatctcatgttccttacaacatggccgagttttccaca
caggcctcacagggaggatatgctgttgattatgccacacaaggagcccatggagcgttt
cctggaaactttatgaaccagaattctcaaggcggttattctcgtttcggtgggagtaac
gaattcatgtctcaggagtatatggcacatggaggagcacaaggtcttttcacccaagct
ggctttatcgactcatcccaggatgatggacaacagcatccttttggtgtgaaccagtgg
cggatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (36)   

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