KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10013628mg
Entry
EUTSA_v10013628mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03013  Nucleocytoplasmic transport
eus03015  mRNA surveillance pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10013628mg
  09122 Translation
   03013 Nucleocytoplasmic transport
    EUTSA_v10013628mg
   03015 mRNA surveillance pathway
    EUTSA_v10013628mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10013628mg
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10013628mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     EUTSA_v10013628mg
Spliceosome [BR:eus03041]
 Complex C
  Other components
   EJC/TREX
    EUTSA_v10013628mg
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    EUTSA_v10013628mg
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 YihI DNA_repr_REX1B
Other DBs
NCBI-GeneID: 18019017
NCBI-ProteinID: XP_006399618
UniProt: V4N695
Position
Unknown
AA seq 427 aa
MGDARDNEAYEEELLDYEEEDEKIPDSGSKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHRDLLKNECPHIVVGTPGRVLAL
AREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNELEKNRKLNDLLDALDFNQVVIFVKSVNR
AKELNKLLVECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASTSDSGVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgggagacgctagagacaacgaagcctacgaggaggagcttctggactatgaggaagag
gacgagaagatcccagattctggaagtaaagttaacggcgaagccgttaagaaagggtac
gtgggaatacacagttcgggattcagagacttccttttgaaaccggagcttcttcgagct
attgttgactcgggatttgaacatccatccgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaaatctggtatggggaagactgctgtgttt
gtgctttcgactctgcaacagatcgaaccatctcctggccaggtttcggcgcttgtcttg
tgccacacaagagagttagcttaccagatctgcaatgagttcgtgcgattcagtacctac
ctgcctgatacaaaggtttcggttttctatggtggagtcaacattaaaattcacagagac
ttgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgggtgcttgcactt
gccagggaaaaagatctctctttgaagaatgtgaggcattttattctggacgagtgtgat
aaaatgcttgagtcacttgacatgcggagagatgtgcaagagatctttaagatgactccc
catgacaaacaagtgatgatgttctcagcaactctcagcaaagagatacgcccagtctgc
aagaagttcatgcaagatccaatggaaatatatgttgatgatgaagcgaaattgactctt
catgggcttgtccagcactacatcaaactgaatgagttggagaagaaccgtaagctgaat
gaccttcttgatgcattggactttaatcaagttgtcatatttgtgaagagcgtgaacaga
gctaaggagctgaacaaattgcttgttgaatgcaatttcccctcaatatgcattcactct
ggcatgtctcaggaagaaaggttgactcactacaaaagtttcaaggaagggcacaagaga
attcttgtggctacagatttggtaggaagaggcattgacattgagcgtgtcaacatcgtt
atcaactacgacatgccagattctgctgatacatatcttcacagggttgggagagccggt
aggtttggaactaagggtcttgcaatcacatttgttgcatctacttcagattcgggcgtt
ctcaatcaggtacaagagaggttcgaggttgatataaaggaactccctgagcagattgat
acttccacatacatgccgtcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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