KEGG T02903: U719

Exiguobacterium sp. MH3: U719_13080

Entry

U719_13080        CDS       T02903

Name

(GenBank) ribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

exm Exiguobacterium sp. MH3

Pathway

exm03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:exm00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    U719_13080
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:exm03019]
    U719_13080
   03016 Transfer RNA biogenesis [BR:exm03016]
    U719_13080
Enzymes [BR:exm01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     U719_13080
Messenger RNA biogenesis [BR:exm03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     U719_13080
Transfer RNA biogenesis [BR:exm03016]
Prokaryotic type
  tRNA degradation factors
   U719_13080

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB S1 RNase_II_C_S1 HTH_12 CSD

Other DBs

NCBI-GeneID:

17606943

NCBI-ProteinID:

AHA30578

Position

complement(2430133..2432487)

AA seq 784 aa
MELRERILTVITTEERPLSIDQLTKKLELADTEAFKELIRTLNAMEDEALIARTRSNKYG
TLAQIGQVAGKISVHQRGFGFVSPEDGSEGDIFLPAPELKNVYNGDRVLVKVFAESNGGD
RREGKLLKILSRGPADFVGTFVSPKGRIESIAYIEPDDTKLTFLPVVANDDTLGAVDGHK
VLARITKYPDGRYAGTAKVLKIIGHKNDPGVDILSIVHKHGINVDFSPEAIAEANAVPDQ
IDEKDLVGRVDLRNELTVTIDGADAKDLDDAVHVKKLANGNFELGVHIADVSHYVKEDSA
LDEEARERGTSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCIMEIDANGAVVNHEIF
QSVIKTTERMTYTDVRKIIEREDEEVIAKYQDLVEYFDKMAELAAILRERRSRRGAINFD
FPEAKVLVNEEGKTSEIILRERSVAEKLIEEFMLAANETVAEHIQRQKLPFMYRIHDEPK
AERLDTFFKFIGNFGINVERKGESVAPKTLQSILNAVEGEPEEAVVSTVMLRSLQQAKYD
IEPIGHFGLSTDYYTHFTSPIRRYPDLMVHRLLREYVIYNDKSQKTQDRYSEILPEIADH
SSKRERRAVDAERETNALKKAEYMEQHIGETFEGVVSGVTNFGMFVELPNTIEGLVHIQA
MTDDFYRYDEANYQLIGERTKQQFRIGDVVEIKVTNVNIDERTIDFSVVGMPERQPKKRF
ESKTIRSSGGRPGQKRDDKKKDDRRGKKRSGKSDQSKGKGFSLKNKKDKPPFHKAVSNKK
RKRK

NT seq 2355 nt +upstreamnt +downstreamnt
ttggaattacgtgaacgaatactaacggtcatcacgacggaagaacgtccgttgtcgatt
gatcaattaacgaaaaaactagaactagcggatacggaagcattcaaggaattgatccgg
acgctaaacgcaatggaagacgaagcgttgattgcccggacacgctcgaacaagtacgga
acgctcgcgcaaatcggtcaagtcgcagggaagatttccgtccaccaacgcggtttcggt
ttcgtctcaccggaagatggttctgaaggcgacatcttcttaccggcaccggaactgaag
aacgtctataacggcgaccgtgtcctcgtcaaagtttttgccgagtcaaacgggggtgac
cgtcgtgaagggaaactgctcaagattctctcacgcggaccagctgatttcgtcggaacg
ttcgtcagtccaaaaggacggatcgaatcaatcgcttacatcgaaccggatgatacgaaa
ctgacgttcttaccggtcgtcgcgaacgacgatacactcggtgccgtcgatggccataaa
gtcctcgcccggattacgaagtatcctgacggtcgctacgccggaacggcaaaagtctta
aaaatcatcggtcacaaaaatgacccaggcgtcgatattttgtcgatcgtccataagcac
gggatcaacgtcgacttctcaccggaagcgatcgctgaggcgaatgccgtaccggatcag
atcgatgaaaaggatttggtcggacgtgtcgatctacggaatgaattgacggtaacgatt
gacggggcggacgcaaaagacctcgatgatgcggttcacgttaagaaattagcgaacggc
aacttcgagcttggtgtccacatcgccgacgtctcgcattacgtcaaagaagattcagca
ctcgatgaagaagcgcgtgagcgcggaacgagtgtttatctcgtcgaccgcgtcatcccg
atgattccgcaccgtctatcgaacggaatctgctcgctcaatccgcacgtcgatcgtttg
acgctcagctgtatcatggaaatcgatgcgaacggtgctgtcgtcaaccatgaaatcttc
cagagtgtcatcaagacgacggaacggatgacgtacacggacgtccggaaaatcatcgaa
cgcgaagacgaggaagtgatcgcgaagtaccaagatctcgtcgagtacttcgacaagatg
gcggaactcgcagcaatcctgcgcgaacgccgctcccgtcgtggggcgatcaactttgac
ttcccagaagcgaaggtcctcgtcaacgaagaaggcaagacgagtgagatcatcctccgg
gagcggtcggtcgccgagaagctgatcgaagagttcatgctcgcagcgaacgaaacggtc
gcagagcacatccagcgtcaaaaactgccgttcatgtaccggatccacgatgagccaaaa
gctgaacgtctcgatacgttcttcaagttcatcggtaacttcgggatcaacgtcgaacgc
aagggcgagtcagtcgcaccgaaaacgttgcaatcgatcctcaacgctgtcgaaggggag
ccagaagaagcagtcgtcagtacggtcatgctccgttcgctccaacaagcgaaatacgac
atcgaaccgatcggtcacttcggtctgtcgacggactactacacgcacttcacgtcaccg
atccgtcgttatccggacttgatggtccaccgtctgttgcgtgaatatgtcatctacaac
gacaagtcacagaagacgcaagaccgttactcagagatcctcccggaaatcgcggatcat
tcgtcgaaacgcgagcgtcgtgcggtagatgcggagcgggaaacgaatgcgttgaagaaa
gccgagtatatggagcaacacatcggtgagacgtttgaaggcgtcgtcagtggtgtcacg
aacttcggaatgttcgtcgaattgccgaacacgatcgaaggactcgtccacattcaagcg
atgacggatgacttctaccgctacgatgaagcgaactatcagttaatcggtgagcggacg
aagcaacagttccggattggggacgtcgttgagatcaaggtcacgaacgtcaacatcgat
gaacggacgatcgacttcagcgtcgtcggaatgccagagcggcaaccgaagaaacggttc
gagtcgaagacgatccgttcaagcggtggacgtccgggacaaaagcgcgacgacaagaag
aaagatgatcgccgtggcaagaaacggtcaggtaagagcgaccaaagcaaaggaaaagga
ttctcgttaaagaataagaaagataaaccgccgttccataaggcggtctcgaataagaaa
cggaagcgcaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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