KEGG   Ficedula albicollis (collared flycatcher): 101805874
Entry
101805874         CDS       T02815                                 
Symbol
POLR2D
Name
(RefSeq) RNA polymerase II subunit D
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03020  RNA polymerase
fab03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101805874 (POLR2D)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101805874 (POLR2D)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fab03021]
    101805874 (POLR2D)
   03400 DNA repair and recombination proteins [BR:fab03400]
    101805874 (POLR2D)
Transcription machinery [BR:fab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     101805874 (POLR2D)
DNA repair and recombination proteins [BR:fab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      101805874 (POLR2D)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom Rop
Other DBs
NCBI-GeneID: 101805874
NCBI-ProteinID: XP_005050880
UniProt: A0A803WB38
Position
9:3907516..3913114
AA seq 142 aa
MAAGGSDPRAADVEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggctggcggcagtgacccgcgggcggcagacgtggaggaggatgcctcgcagctc
gtcttccccaaagaatttgaaactgcggaaactctgctgaactccgaggtgcacatgctg
ctggagcatcgcaagcagcagaacgagagtgcggaggatgagcaggagctgtcggaagtc
ttcatgaaaaccttgaactacacggcgcgcttcagccgcttcaaaaaccgcgagaccatc
gccagcgtgcgcagcttactgctccagaagaagctccataagtttgaattggcctgtttg
gctaacttgtgtcctgagacagccgaggaagcaaaagctctgattcctagcctggagggc
cggtttgaagatgaagaattacaacagattctcgatgatattcagactaaacgcagcttc
cagtattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

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