KEGG   Ficedula albicollis (collared flycatcher): 101808346
Entry
101808346         CDS       T02815                                 
Symbol
TAF5
Name
(RefSeq) TATA-box binding protein associated factor 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101808346 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fab03021]
    101808346 (TAF5)
   03036 Chromosome and associated proteins [BR:fab03036]
    101808346 (TAF5)
Transcription machinery [BR:fab03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     101808346 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     101808346 (TAF5)
Chromosome and associated proteins [BR:fab03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     101808346 (TAF5)
    STAGA complex
     101808346 (TAF5)
    TFTC complex
     101808346 (TAF5)
    SAGA complex
     101808346 (TAF5)
    SLIK complex
     101808346 (TAF5)
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Nup160 CDK5RAP3 WD40_like RAB3GAP2_N eIF2A VID27
Other DBs
NCBI-GeneID: 101808346
NCBI-ProteinID: XP_005048731
Position
6:24268537..24280784
AA seq 767 aa
MRITVSPQRPHSTFPSHRPGPAATKRFRSVAKRSRACLWGQRQQCPSFALTVGALDRQTL
VAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPASAGLLGGSGSDADSGEALLGRG
TGAAAVAVAGNVATVATSSPGVAAVAAVPPGKVGGAVVVEDQPDVSAVLSAYNQQGDPTL
YEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHESEAKSFFERFHGDQEC
YYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIV
QEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLLKEPEFDVPLDDEDEEG
ENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDKLDKVMNMKEAARRVRL
GPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVWSVTPKKLRSVKTAADL
SLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQ
TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCT
RFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGRFLATGATDGRV
LLWDIGHGLMVGELKGHTDTVYALRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFT
TATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAAGAYSSQ
NT seq 2304 nt   +upstreamnt  +downstreamnt
atgcggatcaccgtgagcccgcagcgcccacacagcaccttcccctcacaccgccccggc
cccgctgccacaaagcgcttccgcagcgtcgcaaagcgaagccgcgcgtgcctgtggggg
cagcggcagcagtgcccttcctttgccctcactgtcggggcgttggaccggcagacgctt
gtggctgtgctgcagttcctgcggcgcagcaacctccgcgagtccgaggagatcctacgt
cgcgaagcccgcctgctcggagatgacctgggtgccgccgccctcagccccgccagcgcc
gggctcctggggggctccggcagcgacgcggactccggcgaggcgttgctcggccggggc
accggcgctgccgccgtcgccgtagcaggcaacgtcgccactgtcgcgacttccagcccc
ggggtggctgcagttgccgccgtgccgccggggaaagtcggaggcgcggtggttgtggag
gatcagccggacgtgagcgcggtgctgtcggcctacaaccagcaaggggaccccacgctg
tacgaggagtactacagcggcttgaaacacttcatcgagtgctccctggactgtcatcgg
gcagaactgtctcagctcttttatcctctcttcgtgcacatgtacttggaattggtctac
aatcaacatgagagtgaggcaaagtctttttttgaaagatttcatggggatcaggagtgc
tattaccaggatgacctgcgtgtattgtcgagtttaaccaaaaaagaacatatgaaaggt
aacgagaccatgctggatttccgaacaagcaagtttgtgctgcgcatttcccgtgactct
taccagctcctgaagaggcatcttcaggaaaagcagaacaatcagatctggaacattgtt
caggagcatctttacattgatatctttgatggaatgcctcgcagtaaacaacagatagat
gctatggttggaagcttggctggggaggcaaaacgagaggctaataaagcaaaggttttc
ttcggcttattgaaagaaccagagtttgatgtgcctttggatgatgaagatgaagaagga
gaaaatgaggaaggaaaaccaaagaagaaaaaacctaaaaaagataatgtagggtcaaaa
agtaaaaaacaggaccctaatgctcctccccaaaacagaattcctctgccagaactgaaa
gactctgacaagctggataaagtaatgaatatgaaggaagctgcgaggcgagtgcgtctt
ggaccagagtgcttgccctccatctgtttctacacattccttaatgcttaccagggtctg
actgcagtggatattacagatgactccagcatgattgtaggaggctttgctgactctact
gtcagagtgtggtctgtgactccaaaaaagctacgtagtgtgaaaacagctgcagacctc
agtctcattgataaggaatctgatgatgtcttggagaggatcatggatgagaaaacagca
agtgagttgaagattttgtatggtcacagtggacctgtctatggcaccagcttcagtcct
gataggaactatctgttgtcctgttctgaggatggcaccgtgagattgtggagtctccaa
acattcacgtgtttggtgggatataaaggacacaattatccagtttgggatacacagttc
tctccttatggttattactttgtatctgggggacacgacagagtggctcgtctgtgggca
acagatcactaccagccattacggatctttgctggccatcttgcagatgtgacgtgtacc
cgatttcatccaaactccaactatattgctacaggctcagcagacagaactataaggctc
tgggatgttttgaatgggaattgtgtaagaatattcactggacataagggaccaattcat
tcattggcattttctcctaatggacgattcctggctactggagcaacagatggaagagtt
ctgctgtgggatattggacacggcttgatggttggcgaattgaaagggcacactgacact
gtctatgcgctcagattcagtagggatggggagattttagcatcaggttcaatggataac
acagttcgtctgtgggacgctgtgaaggcatttgaagatttagaaactgatgactttact
acagccactggacacataaacttgcctgaaaactcacaggacttgctactgggcacatac
atgaccaaatcaacccctgttgttcatctccatttcacacgcaggaacctgctgctggct
gcaggtgcctacagctcacagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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