KEGG   Ficedula albicollis (collared flycatcher): 101811090
Entry
101811090         CDS       T02815                                 
Symbol
SSU72
Name
(RefSeq) SSU72 homolog, RNA polymerase II CTD phosphatase
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101811090 (SSU72)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fab03021]
    101811090 (SSU72)
   03019 Messenger RNA biogenesis [BR:fab03019]
    101811090 (SSU72)
Enzymes [BR:fab01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     101811090 (SSU72)
Transcription machinery [BR:fab03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     101811090 (SSU72)
Messenger RNA biogenesis [BR:fab03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     101811090 (SSU72)
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 101811090
NCBI-ProteinID: XP_005057625
UniProt: U3K406
Position
21:5725125..5745174
AA seq 194 aa
MPSAPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT
YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDVFDLILTCEERVYDQVV
EDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE
EKSGRTFLHTVCFY
NT seq 585 nt   +upstreamnt  +downstreamnt
atgccgtccgcgccgctccgcgtggccgtggtgtgctccagcaaccagaaccgcagcatg
gaggcgcataacatcctcagcaaacgaggattcagcgtgcgatcctttggcacagggact
cacgtgaaactgccaggacctgccccggacaagccaaatgtttatgacttcaaaacaaca
tatgatcagatgtacaatgatctgcttaggaaagacaaagaactatacacacagaatgga
attttacacatgttggacagaaataagagaatcaagccacggccagaaagattccagaac
tgcaaagacgtttttgatttgatcctaacatgtgaagaaagagtctatgatcaagtagta
gaagatttaaattccagagagcaagagacgtgtcagccagtgcatgtgatcaatgtagac
attcaggacaaccacgaggaggcaacgctgggagctttcctcatctgtgagctctgccag
tgtatacagcacacagaagacatggaaaatgaaatagatgagctgttacaggaatttgaa
gagaaaagtggaaggacttttcttcatactgtctgcttttattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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