KEGG   Ficedula albicollis (collared flycatcher): 101813477
Entry
101813477         CDS       T02815                                 
Symbol
PNLDC1
Name
(RefSeq) PARN like, ribonuclease domain containing 1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101813477 (PNLDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fab03019]
    101813477 (PNLDC1)
Enzymes [BR:fab01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     101813477 (PNLDC1)
Messenger RNA biogenesis [BR:fab03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     101813477 (PNLDC1)
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 101813477
NCBI-ProteinID: XP_016152863
Position
3:57886554..57897079
AA seq 503 aa
MEFTGLHSTSLQNNEPSLFDSPAERYVKARQSVQRFAPVQLGLAIFSKENSNKYVVHSYN
FFLFPSTLGIRDVEFTLSASSIQFLSHYGFDFNKFLKDGIPYMNEVQEKILRQRLLAGTW
KVCSTSCADRDVLKKAIDEVTSWITAAKEEDTMILQDLNGYHMLEVQLVLRQALKNVWTE
PLGDKEVMVKKVNPQHRQLLENSSYDHCQKKLILLSARGFTNLFLILVKAKKPLVGHNML
MDLMHLHDKFYRPLPESYEEFKRNIHNLFPVIIDTKTVIKSVQKKCLFPRVSSLLEVHAV
LCSNLNPKGPPCPVIALASGCSRYAEKKSPHEAGYDAFLCGSVLLMSAHLLLCRSTDDAV
EAEPSFSQYLTVLAEHVNKVNFIRGGVSSINFSGEDAPCRHPPALVVHVRGWPGLTERQI
YQEFKARCRFDVRRLSKNQFILLSNKYKQVKLVLRDYRHHPHLQVSVYRHWRHSPSVNCL
LQISGIVALWSLLAFALGGARSC
NT seq 1512 nt   +upstreamnt  +downstreamnt
atggagtttactggtttgcattcgacttccctacaaaacaacgagcccagcctgtttgac
tcccctgcggagcggtatgtgaaggccaggcagagtgttcagcgcttcgctcctgttcag
cttgggctggcaatattctcaaaagaaaattcaaacaagtatgtggtgcattcatacaac
ttttttctctttccctcaacactgggaataagagatgtcgaattcaccctctctgcatct
agtattcagttcctgtctcactatggctttgacttcaacaagttcctcaaagatggaatc
ccatacatgaatgaggtacaggagaagatccttaggcagcgcctcttagctggtacctgg
aaagtctgcagcactagttgtgcagacagggatgtcctgaagaaagctattgatgaagtg
acctcttggataactgcagcaaaagaagaggatactatgattctgcaggatttgaatggc
tatcatatgcttgaagttcagctggttctgaggcaggctctcaaaaatgtttggacagag
cctcttggagacaaggaggtaatggtgaaaaaagtgaatccacagcatcgtcagcttctg
gagaactcttcttatgaccactgtcagaaaaagctcattctcctgtctgcccggggcttt
accaacctcttcctgatacttgttaaagccaaaaagcccctggtgggacacaacatgctt
atggaccttatgcatcttcacgacaagttctacaggcccctcccagaaagctatgaggag
tttaaaaggaacattcacaacctgtttcctgtcatcatagacaccaagactgtaataaaa
tctgtgcagaagaaatgtctgtttcctcgagtatctagtcttttggaggtgcatgcagtt
ttgtgcagcaacctaaatcccaaaggtccaccgtgccctgttatagctcttgccagtggc
tgctcaagatacgctgagaagaaatctcctcatgaggcaggctatgatgcatttctctgt
ggttcagttcttctgatgtcagctcatttgctactgtgcagatccacagatgatgcagtg
gaggctgagccttctttctcgcagtatctcactgtgttagctgagcacgtgaacaaagtg
aatttcatccgaggtggcgtttcaagcattaatttttctggggaagatgctccttgccgt
catccccctgccttggttgttcatgtccgaggctggccagggctgacagagagacaaatt
taccaagagtttaaagctcgttgtcgctttgatgtcagacggctttcaaagaaccagttc
attctgctctccaataaatacaagcaagtcaagctggtcctgcgggattacaggcaccac
cctcacctgcaggtctccgtctatcgccactggaggcactcgccgagcgtgaactgcctg
ctgcaaatctctggcattgtggcactgtggtctctcttggcctttgcgcttggaggagct
cgtagctgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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