KEGG   Ficedula albicollis (collared flycatcher): 101818692
Entry
101818692         CDS       T02815                                 
Symbol
LTN1
Name
(RefSeq) listerin E3 ubiquitin protein ligase 1
  KO
K22377  E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
Organism
fab  Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:fab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:fab03009]
    101818692 (LTN1)
   04121 Ubiquitin system [BR:fab04121]
    101818692 (LTN1)
Enzymes [BR:fab01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     101818692 (LTN1)
Ribosome biogenesis [BR:fab03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    101818692 (LTN1)
Ubiquitin system [BR:fab04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    101818692 (LTN1)
SSDB
Motif
Pfam: zf-RING_2 zf-ANAPC11 zf-rbx1 FANCL_C RINGv zf-RING-like zf-C3HC4 zf-RING_16 zf-C3HC4_2
Other DBs
NCBI-GeneID: 101818692
NCBI-ProteinID: XP_005038804
UniProt: U3JUZ7
Position
1:complement(104137375..104167316)
AA seq 1769 aa
MGGKNKQRTKGSLRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSL
VDADFRMVLRKLSKRDVTTKLKAMQEFGMMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPSSKQP
EALVFCKDEILNVLQDHLLKETADTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSMLP
KKEMHSLEEKLMSLLSQNKFWKYSKNSVSQVRSAFFELISAFCQHLPEAVKAEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYTITTVEDCWSHVNARKGVLPKLWTVLREGGRGLATVIY
PNLLPFISKVPPDVVEPKLEFFRVFFSSIIQGLSSERTIASPSESSAIITAFMECLCFAV
LQKREEEDQSQIHQMLICDQLIPFTNTVLKEPKLQSGPLFYQTAEMLSSWEAKAELSNDD
GTDEVFQKLLSDFWDHLLRMCMLHVDRLDADEKLLFAISGMLEILQNPKSATKPNNRKSL
KIRFTDEDESERNTESQKLTEVRNGDSEIQADLQQTSHLRKEPLENLVCNLAELSIVYVN
EQKSEQHLKFLSALLNSFSSNRVFQVLLEQGNDVSPAQAESQNEVKAHNQSPSVQFLYLN
LITWLKEDWRKDTHFLVDILYSVLHCCNNNEERKVILDDLAKMDLKWVIFLQIIQKACSS
TTKLSLVSDWLKGDTLGERLVMLADDLCHLGLKPRAASSGSASSERWTLLSLVLSQHVKS
ESLIGETFVERIIDKLQAALSKAKDLSEAGNTEPSVSFICDVASSFFSSVKGCLLMPSSE
DLLLTIFQLCAQRQDATHLTDVLVCKLKHTWMSGVNSLVHQLQSTQKQSTFLLKAALWVK
NQVQSSSLDVKSLQVLISAVSDLLLKLMEADGQSGYLVRAYVEHVTPNKTEWWKLHESLC
SEWMHKPLLEGRLSMNCEPLGSSVKLCGTTKLPGHLCTSALLSKMVLLQLKNTVVHGNDD
AERKKIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMHITYEEFSALTSTASLQQTI
FDRSEEHGRLWSLTLAKVIHSENTASWERRELFKTTEGFLPLTEGRLHTLQCLSPFLIEE
EKRELVFHCVAKLMTCTQTELSSTDGAFGCLSILNSCMKDRSIDCDHLLPAILKIIISWK
NDNEDSFLFSCNLKEASAQLLGFNIEMMRYLPLLLKYSTAPLADNEWDFVMCSMLAWLET
TSESRLLYHVPLVQIFACVSCDLASALSAYFEAAAPDTTADLPKNLVSEWKEFFSEGIHN
LLLPLLVKITGETKNASEGSFQNSVLSSLGEALTYISKDQLLDHKLPPKFVAGQKTNLPD
NLQTLLNTLSPLLLFRARPVQVSVYHMLHKLMPELPKFDDEDLKSYGDEEEELALSPPAA
LMSVLATQELLLENILECIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLRV
LYSQYLRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDTKTFFTEELRLDVKGTGVLS
SQIPHLACSVYHITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSVQTS
TQLFNGMTVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQWR
NWMLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTC
KKKFHSACLYKWFSSSNKSTCPLCRETFL
NT seq 5310 nt   +upstreamnt  +downstreamnt
atggggggcaagaacaagcagcgaaccaagggcagcctgcggccttctagcagtggccga
gctgcagagctccttgccaaagaacgtgggacagtgcctgggtttatcggctttggaaca
tctcagagcgatctgggatacgttcctgcaattcaaggagcagaggaaatagacagcctt
gtggatgctgatttccgaatggtgctgcggaaactttctaaaagggatgtcacaaccaag
ttaaaagctatgcaagagtttgggatgatgtgcaaggaaagagaagcagaagttgttaaa
ggtgttcttccttactggccaagaatttattgtaaaatttcactagatcatgatcgacgt
gttcgagaagcaactcagcaatcttttgagcaactgattcttaaagtaaaaaaacattta
gctccttacttaaaaagtatcatgggttactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttccttcgagcaaacaacct
gaagccttagtattctgtaaggatgaaattcttaatgtacttcaagatcaccttctgaag
gaaacagctgatacactcagtgaccctcaaactgtaccagaagaagaaagggaagccaaa
tttttccggattctgacctgttccttgttagctttaaaaaagttgctcagcatgttgcca
aagaaagagatgcattcattggaggaaaagttaatgtcacttctatctcaaaacaaattt
tggaaatatagcaaaaacagcgtatcacaggttcgctcagctttctttgagctgatttct
gctttttgccagcacttgcctgaggcagtgaaagctgaagcaccaagagtttgtcctgct
gttcttctcagcattgatgacagtgatgcagtggtgtgtcctgctctttgggaagcagtg
ctttatactatcaccactgttgaggactgttggagtcatgtaaatgccagaaaaggagtt
ctgccaaagctgtggacagtgcttcgagaaggtgggcgaggattagctactgttatctac
ccaaacctcctgcccttcattagcaaggtgcctcctgacgttgtggaacccaagctggaa
ttcttcagagtttttttcagctctataattcaagggttgtcaagtgagaggacaatagcc
agcccttcagaaagttcagcaattataactgcatttatggagtgtctgtgctttgctgta
ctacagaaaagggaagaagaagaccaaagccaaattcatcaaatgcttatatgtgaccag
ctaattccttttaccaatactgtacttaaggagcccaagttacaaagtggaccattattt
tatcaaacagcagaaatgctgagttcctgggaagctaaagcagaactctccaatgatgat
ggtacagatgaagttttccagaaactgttgtcagatttttgggaccatcttttaagaatg
tgtatgcttcatgttgataggctggatgctgatgagaaattactgtttgccatatctggt
atgctagaaattcttcagaatccaaagagtgctacgaaaccaaacaataggaaatctcta
aagatcagatttacagatgaggatgaatctgaaaggaacacagagagtcaaaagctcacg
gaagtgagaaatggtgactctgaaattcaggctgacttgcagcaaacttcacatctaagg
aaagaacctctagagaacttagtctgcaacctggctgagctgagcattgtgtatgtcaat
gaacagaagtcagaacagcatttgaaattcctctctgccctgctcaactctttctcctca
aacagagttttccaagtacttttggagcagggaaatgatgtaagccccgctcaagctgaa
tctcaaaatgaagtgaaggctcataaccaaagtccatctgtacaatttctgtatctcaat
ttaataacttggctgaaagaagactggaggaaagacacccatttcctggttgatatttta
tacagtgtactgcattgttgcaacaataatgaagaaaggaaagtaattcttgatgattta
gcaaagatggatttgaaatgggttatatttctccagataattcaaaaggcatgctcaagc
acaacaaaactttccttagtctctgactggctgaaaggagacacacttggagaaaggctg
gtaatgctggcagatgatctgtgtcacctgggtttgaaacctagagcagcctcatcagga
tcagcctcttcagaaaggtggaccctcctgagcttggtgttgtcacagcatgttaaaagt
gaatcattgattggtgaaacttttgttgaaaggattattgataaacttcaagcagctctg
tctaaagcaaaggatctttctgaagctggaaatactgaaccatcagtatctttcatctgc
gatgtggcctcgagctttttcagctcagtgaaagggtgtttgctgatgccatcctcagaa
gacttgctccttaccatcttccagctgtgtgctcagaggcaggatgcaacacacttgaca
gatgtacttgtatgcaaattaaaacacacttggatgtctggtgtgaattcacttgtgcac
cagcttcagagcactcagaaacagagcacctttttgcttaaagctgcactttgggtcaag
aaccaagttcagtcttcctctttggatgttaaaagtcttcaggttttgatctctgcagtg
agtgatttgttgttgaagctcatggaagctgatggacagtctgggtatcttgtgagagct
tatgttgagcacgtcacaccaaacaaaaccgaatggtggaaattgcacgagtctctgtgc
tctgagtggatgcacaaacctcttttggaaggaaggcttagtatgaattgtgaacctctg
ggatcaagtgtcaagctgtgtggcacaactaaacttccaggccacctgtgtacttcagcc
ttattgagtaaaatggtcctacttcaactgaaaaatactgtagtccatggaaatgatgat
gctgaaagaaagaaaattgataatataattgcagaactgttgtactcattacaatggatt
gaagaattggagaatcctccttatctgcttctggagtatcttcatatgttagaagagatg
cacatcacatatgaggagttcagtgctctgactagtacagctagcctgcagcaaactata
tttgacagatcagaggaacatggaagactctggtccttaaccctggccaaagtgatccat
tctgagaacactgcatcctgggagaggagagaacttttcaagacaacagaagggttcctt
ccattaacagagggcagattgcatacacttcagtgtttatcacctttcttaattgaggaa
gaaaagagggaacttgtcttccattgtgtggccaaacttatgacatgtacacagacagag
ctctccagcactgatggagcatttggatgtctttccattttgaactcctgcatgaaggat
agaagtattgattgtgatcatctactacctgcaatactgaaaatcataatatcttggaaa
aatgataatgaggacagctttctgtttagctgcaatctgaaagaagcaagtgctcagttg
cttggtttcaacattgagatgatgcgttaccttcccttgctgctgaaatattccacagct
cctctggctgataacgagtgggactttgtgatgtgctccatgctggcttggttagagaca
acaagtgaaagccgtttgctttaccatgtcccgcttgtgcagatttttgcttgtgtcagt
tgtgacttggcatctgcccttagtgcttactttgaggctgcagctcctgacactactgca
gatcttcctaagaacttggtcagtgaatggaaagaattcttttctgagggaattcacaat
ttgctgttacctttgttggtgaaaatcacaggggaaaccaaaaatgcatcagaaggctct
tttcagaactctgtgttgtcatctttgggtgaagctctaacttacatctcgaaggaccag
ttgttagaccataagctgccaccgaagtttgttgcaggccagaagacaaatcttccagat
aatctccagaccctactgaacacactctctccattgctgcttttccgggctcgacctgta
caggtttctgtctaccatatgcttcataaattaatgcctgaattgcctaaatttgatgac
gaagatctcaagtcctatggtgatgaagaggaggaattggcattatcacctccagcagct
ctgatgtctgtcctggccactcaagagctcttgctggaaaacatcctggaatgcattcca
gttggagaatttgcagttattcaacccctgagtgatgagttctgccttgttctaggatat
cttctcacttggaagttaacattagctttctttaaagcagcttcttctcagctgcgagtt
ctctactcacaataccttagaagaactaaaagcttgaataaactgctttatcacttgttc
aggcttatgcctgaaaaccctgtcttttctgggccaacttcagaagttccaaataaggac
acaaaaaccttctttactgaagagcttcgtttagatgtcaaaggaacaggggtgctgtca
tcccagatcccacacttggcctgctctgtgtaccatataacactgaaagatctgccagcc
atggtgaggctgtggtggaatagctgtgagaagcgtgtcttcaatgttgtggataaattc
acaagcaaatatgtcagcagtgtgctctcctctcaggaaatatcttctgtccagactagc
acacagttatttaatggcatgacagtaaaagctcgatctgcagcacgagaagtcattgca
acctattctgttgatgatatctttattgaactaataatccagcttccatcaaattatcca
ctgggatccataacagttgagagtggaaagagggttggtgtggctgtccagcagtggcgc
aactggatgctgcagttaagcacataccttacacatcagaatggaagtattatggaaggc
ttatctttgtggaaaaataatgtggataaacgttttgaaggcgttgaagattgcatgatc
tgtttttcagtcattcatggttcaaactattctcttcccaaaaaagcttgcagaacatgc
aagaagaagtttcattcagcttgcttgtacaaatggttctcatccagcaacaaatccaca
tgtccactgtgtagagagacattcttgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (47)   

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