KEGG   Ficedula albicollis (collared flycatcher): 101819193
Entry
101819193         CDS       T02815                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03082  ATP-dependent chromatin remodeling
fab03083  Polycomb repressive complex
fab04110  Cell cycle
fab04330  Notch signaling pathway
fab04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101819193 (HDAC1)
   03083 Polycomb repressive complex
    101819193 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    101819193 (HDAC1)
   04350 TGF-beta signaling pathway
    101819193 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    101819193 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:fab03036]
    101819193 (HDAC1)
Enzymes [BR:fab01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101819193 (HDAC1)
Chromosome and associated proteins [BR:fab03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     101819193 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     101819193 (HDAC1)
    BRAF-HDAC complex
     101819193 (HDAC1)
    REST complex
     101819193 (HDAC1)
    SHIP complex
     101819193 (HDAC1)
    MiDAC complex
     101819193 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     101819193 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101819193 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    101819193 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl Dehydrin RNA_polI_A34
Other DBs
NCBI-GeneID: 101819193
NCBI-ProteinID: XP_016159213
UniProt: U3JD04
Position
23:complement(5766740..5774031)
AA seq 457 aa
MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGD
RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAV
QEDSGDEEEDDPEKRISVRNSNKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKAEEEK
EEEEKKEEKEEEKAKEEKAAAAAAAEPKGVKEETKST
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgaaaccccacaggatccgcatgacccacaacctcctgctcaactatgggctctacagg
aagatggagatttatcgtcctcacaaggccaacgcagaggagatgaccaagtaccacagc
gatgattacatcaaattcctgaggtccatccgccctgacaacatgtctgagtacagcaag
cagatgcagagatttaatgttggggaggactgccctgtgtttgatgggctctttgagttc
tgtcagctctctgctggaggctctgttgccagtgctgtgaagctgaacaagcagcagaca
gacattgcagtgaactgggcaggggggctccaccacgccaaaaaatcagaagcttctgga
ttctgctacgtcaacgacatcgtcctggccatcctggagctcctcaagtaccaccagcga
gtgctgtacattgacattgacatccaccacggggatggggtggaggaggctttttacacc
acagacagggtcatgaccgtgtccttccacaaatatggagaatatttcccaggaactggg
gacctaagggacatcggggcaggcaaagggaaatactacgctgtgaattacccgctgcgg
gacggcatcgacgacgagtcctacgaggccattttcaaacctgtgatctccaaagtgatg
gagacgttccagcccagcgctgttgtcctgcagtgtggctctgattccctgtctggggac
aggctgggctgcttcaacctcaccatcaaaggccatgccaagtgtgtggagtttgtgaag
agctttaacctgcccatgctgatgctgggaggaggggggtacacgatccgaaacgtggct
cgctgctggacctacgagactgccgtggccctggacactgagatccccaatgaacttcca
tacaacgactactttgagtactttgggccagacttcaagctccacatcagcccctccaac
atgaccaaccagaacaccaacgaatacctggagaaaatcaagcagagactctttgagaac
ctgaggatgctcccccacgctcctggggtgcagatgcagccgattcctgaggatgctgtg
caggaggacagtggggatgaggaggaggatgatcctgaaaaacgcatttctgtccgaaat
tccaacaagaggatatcctgtgatgaggaattctcagattctgaggacgagggcgagggg
gggcgcaaaaacgtcgccaacttcaagaaagccaaacgtgtgaaagcagaggaggagaag
gaggaggaggagaagaaagaggagaaggaagaggaaaaagcaaaagaggaaaaagcagca
gcagcagcagcagcagaacccaaaggggtgaaggaagagacaaaatccacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system