KEGG   Ficedula albicollis (collared flycatcher): 101821019
Entry
101821019         CDS       T02815                                 
Symbol
PMS2
Name
(RefSeq) PMS1 homolog 2, mismatch repair system component
  KO
K10858  DNA mismatch repair protein PMS2
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03430  Mismatch repair
fab03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    101821019 (PMS2)
   03460 Fanconi anemia pathway
    101821019 (PMS2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fab03400]
    101821019 (PMS2)
DNA repair and recombination proteins [BR:fab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     101821019 (PMS2)
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 101821019
NCBI-ProteinID: XP_005054715
Position
14:complement(14761543..14773424)
AA seq 947 aa
MMQQDGTRPAGHSHRTGKELGTAIQTPSACSGPGPASAPPARPFTVPRSSHGPRRGSAFP
SVPVSPPGSLGKPQWVRCPSLRSPQPAGPIRPIERRSVHRICSGQVVLNLGTAVKELVEN
SLDAGATNIDIKLKDHGAELIEVSDNGAGVEEENFEGLTLKHYTSKIQDFSDLIHVETFG
FRGEALSSLCALSDVTIFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVSIQQLFYT
LPVRHKEFQRNIKKEYAKMVQLLQAYCIVSKGVRINCTNQVGQGKKSCVISTAGSPSLKE
NIGAVFGQKQLQSLIPFVQVPPSEAVCEEYGLNPADMPQNLYSITGFVSRCDHGVGRSTT
DRQFFFINQRPCDPAKVVKIVNEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILL
QEEKFLLAILKTSLMEMFGSDVNKLNVNQKLLDIAGNLKKTIPEETEKPQAEILSDSETE
SPSGEGKRIMTLARLRESFSLHQATESNFKSSKKVKQQHHSPRQRLLGTPGSTVKIQKAV
LPKEAETCQKFDSKVSVPRRHLRKLEDTADSGSCSISESDAGCSTPEAVSCINSESAVNS
EEEFCSTEEQMEKECLKTAECSKKSLDNDVQVLGTEPKLDQVNDWTDQNKFSQEANNCSP
RVKRFKSRNFKSEADDSKAGKYPEVENTSVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQ
QQKNADTENYRRFKAKISPGENKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDL
FIIDQHATDEKYNFEMLQQHTVLQPQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVI
NENAPVTQRVKLVSLPTSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASQACRKS
VMIGTALNVQEMRKLITHMGEIEHPWNCPHGRPTMRHIVSLDLISPE
NT seq 2844 nt   +upstreamnt  +downstreamnt
atgatgcagcaggacggaacgaggcctgctgggcactctcacaggaccggcaaggagctg
ggcacggccatccaaaccccgagtgcgtgcagcggccctggccctgcctccgcaccccct
gccaggcccttcacggtaccgcgctcctcgcacgggccccggcgcggttccgccttcccc
tcggttcccgtctcccctcccggctccttggggaagcctcagtgggttcgctgtccctct
ctccgcagcccgcagcccgccgggcccatccggcccatcgagcgccgctctgtccatcgc
atctgctcgggccaggtcgtgctgaacctcggcactgcagtgaaggagctggtggaaaac
agcctggatgccggagctaccaacatcgatataaaacttaaagatcatggggcagaactg
atagaagtttcagataatggagctggagtggaagaggaaaactttgaaggcttgactctg
aaacattacacatcaaagatacaagatttttctgatctaatacatgttgaaacatttggg
tttcgaggtgaagctttgagttcactatgtgcattaagtgatgttaccattttcacctgt
cataagtcagcaaaggttgggactcgtttggtgtttgatcacaatggcaaaatcactcag
aagactccattcccacgacagcaaggaacaactgtcagcatccagcagctgttttatacg
ttaccagtgcggcataaagagttccaaaggaacatcaaaaaggaatatgcaaaaatggtc
cagctgttacaggcctactgtattgtttccaaaggagtgcggattaactgcactaatcaa
gttggccaagggaaaaaaagctgtgtgatatccactgctggaagtcccagtttaaaggag
aacattggagcagtatttggacagaaacagttgcagagccttattccttttgttcaggtt
cctcctagtgaagctgtttgtgaagaatatggactcaaccctgctgacatgccacaaaat
ctttatagtattactggcttcgtttctcgttgtgatcacggtgttggaaggagcacgaca
gacagacagttcttctttatcaaccaacgtccctgtgatccagcaaaggttgtcaagatt
gtgaatgaagtttatcacttacacaataaacaccagtatccatttgttgtccttaacatt
ggggtagattctgagtgtgttgacatcaatgttactcctgacaaaaggcaaattttactt
caggaggaaaagtttttattagcaattctgaagacttctctgatggagatgtttggtagt
gatgttaacaaactaaatgtcaatcagaaacttctggacattgcaggtaacttgaagaag
acaattcctgaagagacagaaaagcctcaggcagaaatactgtctgactctgagactgaa
agtccaagtggtgaaggcaaaagaataatgactcttgccagattaagggagtcattctct
ctacatcaagcaacagaaagtaattttaaaagctctaaaaaggtaaaacagcagcaccat
tctccaagacaaaggttacttggtacccctgggagtactgtaaagattcaaaaggctgtc
ttgcctaaggaggctgagacttgtcagaagtttgactcaaaagtgtcagttccaaggaga
cacttgagaaaattagaagatactgcagattctggatcctgtagcatttctgaatcagat
gctggatgtagtacaccagaagctgtaagctgcatcaatagtgaaagtgcagttaattct
gaagaagaattctgtagcacagaagaacagatggagaaggaatgtcttaaaactgctgaa
tgtagtaagaagtcattggacaatgatgttcaggtcttgggcactgaacccaagctagat
caagtgaatgactggactgatcaaaacaagttctctcaagaagccaataattgttcccca
agagtaaaacgttttaaaagcagaaactttaagagtgaagcagatgattccaaggcaggt
aaatatcctgaagtggagaacactagtgttgatgtactggtggaagttaaaaagaaaatt
gtgcctcttgaattctctatgaaggttttggcagaaaaggtaaaaaaggtaatacagcaa
caacagaaaaatgcagacactgaaaactacagaagatttaaagcaaaaattagtcctggg
gagaataaagtagcagaagatgaattaagaaaagagatcagtaaagaaatgtttgcaaaa
atggaaatcattggccagttcaatttagggtttataatagcaaagttgaattctgatctt
ttcataattgaccaacatgctactgatgagaaatacaactttgagatgttgcaacaacac
actgttctccaacctcagaagctgatagtgcctcaaaatctcaatttaacagcagtaaat
gaaactgtattgattgaaaacctcgaaatattccgaaaaaatggctttgattttgtcata
aatgaaaatgctcccgtaactcaaagagttaaattggtgtcattgccaacaagcaaaaac
tggacttttggtccacaagacatagatgagctgatcttcatgttgagtgactgccctgga
gtgatgtgcaggccctcgagggtcagacagatgtttgcttctcaagcttgcaggaagtct
gtgatgattggaactgcactgaatgtgcaggaaatgagaaaactgatcacccatatgggt
gagattgagcatccctggaactgcccccatggaaggcctactatgagacacatagtcagt
ttagatctgatttcaccagaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (43)   

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