KEGG   Ficedula albicollis (collared flycatcher): 101821403
Entry
101821403         CDS       T02815                                 
Symbol
SCN1A
Name
(RefSeq) sodium voltage-gated channel alpha subunit 1
  KO
K04833  voltage-gated sodium channel type I alpha
Organism
fab  Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:fab00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:fab04040]
    101821403 (SCN1A)
Ion channels [BR:fab04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   101821403 (SCN1A)
SSDB
Motif
Pfam: Ion_trans Na_trans_cytopl Na_trans_assoc PKD_channel GPHH IQ Lustrin_cystein SieB Chlamy_scaf FUT8_N_cat
Other DBs
NCBI-GeneID: 101821403
NCBI-ProteinID: XP_016155197
Position
7:19938068..20030708
AA seq 2013 aa
MEQSVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNPKQDRKDDDENGPKPNSDLEAGKT
LPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSSIG
ENGTLVNSTVTPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEAAQSAAVAAAAVTASAESREPSA
GGEAGGLSESSSDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRK
GFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFAD
DEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVS
LVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTEPEMRKRISGSFHVSMDFLEDPALRER
AMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDL
AITICIVLNTLFMAMEHYPMTDEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGW
NIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKSYKECVCKISSDCELPRWHMHDFFHSFLIVFRVLCGEW
IETMWDCMEVAGQAMCLIVFMLVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNL
QIAVARMQKGIDYVKRKVREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKD
HDYIKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEF
SSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQ
VSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLE
YADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
YYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKG
WMDIMYAAIDSRDVLLQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF
GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICL
NMVTMMVETDDQSEEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVI
LSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPI
LNSGEPDCDPHKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVAT
EESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALDPPLHLPKPNKVQLIAMD
LPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRK
QEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGMKDEILIDKLNENSFTEKT
DITASTAVCPPSYDRVMRPVKEKHEKEDKDGQK
NT seq 6042 nt   +upstreamnt  +downstreamnt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacagcgcattgctgcagaaaaagccaaaaatcctaaacaagat
cgtaaagacgatgatgaaaatgggccaaaaccaaacagtgatttggaggcaggaaaaaca
ctccccttcatatatggtgacatacctccaggaatggtgtctgagcccttggaagacatg
gacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaacacccttcaaccctcttagaaaaata
gctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttgacc
aactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagaatatacg
ttcactggcatttacacatttgagtcactaataaaaatcattgcaaggggcttttgttta
gaagattttacttttcttcgagatccatggaactggcttgatttcactgtcattaccttt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagctttgaaaacaatatcagtcattccaggcctgaagactattgtgggagccctg
attcagtcagtgaagaagctctcagatgtgatgatcctgactgtgttctgtctgagtgta
tttgcactgatagggctgcagctgttcatgggcaacctgaggaataaatgcctgcagtgg
cctccagaaaattttactttggaaacaaatattacctcccagctaaacagcagcataggt
gaaaatggtacattggttaattcaacagtgactccgtttgactggaaggggtacattgaa
gatgaaagtcatttttattttctggaagggcaaaacgatgctctgctttgtggaaatagc
tctgatgctgggcagtgcccagaaggatatacttgtgtgaaagctggcagaaaccccaac
tatggctacacaagttttgacacgttcagctgggctttcttgtcactgtttcggctaatg
actcaggacttctgggaaaacctctatcaattgactcttcgtgctgctgggaagacatac
atgatattttttgttctggtgatttttctgggctctttctatctgataaacctgatcctg
gctgtggttgccatggcctatgaagagcagaatcaagcaacaatggaagaagcagagcag
aaagaggcagaatttcaacagatgctggaacaactgaagaagcagcaagaagcagcacag
tcagcagcagtggcagcagcagcagtaacagcatctgcagagtccagggagcccagtgcc
ggaggagaagcaggagggctctcagaaagttcctcagatgcatcaaaattgagctcaaag
agtgcaaaagagaggagaaataggaggaaaaaaaggaaacagaaagagcagtctggagga
gaggaaaaagatgaagatgaatttcacaagtctgaatcagaagacagcatcagaaggaaa
ggtttccgattgtctattgagggcaatagactgacatatgaaaagaagtattcttctcca
catcagtccctgctgagcattcgtggctccctgttttccccaaggcgcaacagcagaaca
agtctgttcagcttcagaggtcgagcaaaggatgtgggatctgaaaatgactttgctgat
gatgagcacagcacttttgaagacaatgacagcagaagagattctctgtttgtgccgcgc
aggcacggcgagcggcgcaacagtaacattagccaggccagtaggtcatccaggatgctg
gcagtgtttccagtgaacgggaagatgcacagcactgtggattgcaatggggtggtttcc
ctggttggtggaccatctgttcccacatcgcccgttggacagcttctgccagaggtgata
atagataaaccagctactgatgacaatggcaccacaacagaaccagaaatgaggaagaga
atatcaggttcttttcacgtttccatggacttcctggaagatccagctttaagggaaaga
gccatgagtattgctagcatcctcacaaacactgtggaagaacttgaagaatcgagacag
aaatgtccaccatgttggtataaattcgcaaatattttcttgatctgggactgcagtcca
cattggttaaaagttaagcatattgtcaacttagtggtaatggacccatttgttgacctg
gctataacaatttgcattgttttaaatacactcttcatggctatggaacattatccgatg
accgatgagttcaataatgtactttcagttggaaatctggtcttcactggaatcttcaca
gcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggttgg
aatatttttgatggttttatcgtaacacttagtttggttgaacttggtcttgcagatgtg
gaaggactatcagttcttcgatcattcagattgctgcgagttttcaaattggcaaaatct
tggccaaccctaaatatgctgattaagattattggcaattctgtgggggctctggggaac
ctgaccctggtgctggccatcattgtgttcattttcgctgtggttgggatgcagctgttt
gggaaaagctacaaggaatgtgtctgcaagatctccagtgactgtgaacttcctcgctgg
cacatgcacgactttttccactctttcctgattgtattccgagtgctgtgtggagaatgg
atagaaacaatgtgggactgcatggaggttgcaggccaagccatgtgccttattgttttc
atgctggtcatggtgattggaaacctagtggtactgaatctatttttggccttgctcttg
agctcattcagtgctgacaacctggctgtgacagatgatgataatgaaatgaacaatctc
cagattgctgtggcaagaatgcagaaaggcatagattatgtgaagagaaaagtgcgtgaa
ttcatccaaaaagcctttgttaaaaaacagaaagctttagatgaaatcaagccgcttgaa
gatttaaacaacaaaaacagctgtatttctaaccatacaactgtggaactaagcaaggac
catgactatattaaagatgcaaatggaaccaccagtggtataggcacaggcagcagtgtg
gaaaaatacataattgatgagagtgattacatgtcattcataaacaacccaagcctcact
gtgacagtgcccattgctgtgggtgaatccgactttgaaaatctaaacacagaagaattt
agtagtgaatcagatctggaagaaagcaaagagaagttgaattcatccagttcatctgaa
ggcagcacagttgatattggacttcctgcagaagaacaaccagaagctgaacctgaagaa
gcccaggagccagaggcatgtttcacagaaggctgtgtgagaaggttcaagtgctgtcaa
gtaagtatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttcagg
attgttgaacacaactggtttgagactttcattgtctttatgattctcctcagtagtgga
gctctggcttttgaagacatatatattgaacaacgtaaaaccatcaagaccatgctggaa
tacgctgacaaagtcttcacttacatcttcattctggaaatgctgctgaagtgggtggcc
tatggctaccaaacatattttactaatgcctggtgctggctggacttcctgattgttgat
gtctctttggttagcttaacagcaaatgcattgggttactcagaacttggtgccattaag
tcccttaggacactaagagctttgagacctctaagagccttgtcacgatttgaaggcatg
agggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctcgtt
tgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaagttc
tactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccagatcaacaatttt
agtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaagta
aactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaaggc
tggatggatattatgtatgcagctattgactcaagagatgtgttactgcaaccgaagtat
gaagacaacttgtatatgtacttgtattttgtcatctttataattttcgggtcttttttc
accctgaatttgttcattggtgtcattattgacaacttcaatcagcaaaaaaagaagttt
ggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaaaag
ctgggatccaaaaaaccacaaaaacctataccaagaccagggaataaattccaaggcatg
gtctttgattttgtgacacagcaagtatttgacataagcatcatgattcttatttgcctt
aacatggttaccatgatggtagaaacagatgaccagagcgaagaaatggaaaatatttta
tactggataaaccttgtgttcattgtccttttcactggagaatgtgtcctgaaattaatt
tcgcttcgccattactacttcactataggctggaacatttttgattttgtggttgtcatt
ctctctatagtaggtatgttcttagctgagatgattgagaagtactttgtgtctcccaca
ctattcagagtcatccgacttgccagaatcggtcgaatcctgcgcctcattaaaggcgcc
aagggaatccgcactctgctttttgctttgatgatgtctcttcctgctttgttcaacatt
gggctgctgctcttcctggtcatgttcatctacgcaatatttggcatgtccaactttgcc
tatgtcaagagggaagctgggattgatgacatgttcaactttgaaacgtttggcaacagc
atgatctgcctgtttcagatcaccacgtccgctggctgggacggtttgctcgccccaatt
ctgaacagtggggagccagactgtgacccccataaagatcatccagggagctctgtgaaa
ggtgactgtggcaacccttctgttgggattttcttctttgtcagctacattatcatatcc
ttcctggtagtggtgaacatgtacattgctgtgattttggagaacttcagtgttgctact
gaagaaagcgctgaacccttgagcgaggatgactttgagatgttctatgaagtctgggag
aagtttgatcctgatgcaacacaattcatggaatttgagaaattgtctgattttgcagca
gcgcttgaccctcctcttcatctacccaaaccaaacaaagtccagcttattgcaatggac
ctgcccatggtgagcggtgacagaattcactgccttgacatcttgtttgctttcacaaag
cgtgtgttgggggaaagcggggagatggacgccctcagaatacagatggaagatcggttt
atggcagccaatccttctaaagtctcctatgaaccaattacaaccacactgaaacgaaag
caggaggaggtgtctgctgtcatcattcagcgtgcttacagacgtcaccttttaaaacga
acagtaaaacaagcttcctttatctataacaaaaataaaactgaaggtggggctggtcag
ggtatgaaagatgaaatccttattgacaaattaaatgaaaactcatttacagagaaaaca
gatataacagcatcaacagcagtttgtccaccctcttatgatcgtgtaatgaggccagtg
aaagaaaagcatgaaaaggaagataaagatggtcagaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (33)   

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