KEGG   Flavobacterium columnare: FCOL_02165
Entry
FCOL_02165        CDS       T01653                                 
Name
(GenBank) exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
fco  Flavobacterium columnare
Pathway
fco03030  DNA replication
fco03430  Mismatch repair
fco03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FCOL_02165
   03430 Mismatch repair
    FCOL_02165
   03440 Homologous recombination
    FCOL_02165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fco03032]
    FCOL_02165
   03400 DNA repair and recombination proteins [BR:fco03400]
    FCOL_02165
Enzymes [BR:fco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     FCOL_02165
DNA replication proteins [BR:fco03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     FCOL_02165
DNA repair and recombination proteins [BR:fco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     FCOL_02165
SSDB
Motif
Pfam: RNase_T DNA_pol_A_exo1 RNase_H_2 DEDDh_C
Other DBs
NCBI-ProteinID: AEW85280
UniProt: G8XB08
Position
complement(498704..499267)
AA seq 187 aa
MLDWLKHLGKEYPDFWKQYLVQLEIPSVRKVALHIETTGLNPSKDKIISIGAVVIENNQI
IIEQSLEIELEKDKIINAKELTYEEAQAIEAFIHFIGNATLIGHRIHYDIEILNEYLSKL
HSGRIKNNLLDIEVMETRILDLSSKIFSLEELFSTYKIKKTEVLTSGNLAFNIGLLFLKM
RGKLKIS
NT seq 564 nt   +upstreamnt  +downstreamnt
atgctcgattggttaaaacatttaggaaaagaatatccagatttttggaaacaatactta
gttcagttagaaataccttctgtacgaaaggtagctttgcatattgaaactacaggatta
aatccatcaaaagataaaattatttcaataggagctgttgtcattgaaaacaatcaaatt
ataattgaacaaagcttagaaattgaactagaaaaagataaaattattaatgcaaaagaa
ttaacgtacgaagaagcacaagccattgaagcttttattcattttataggcaatgctaca
cttatagggcatcgtatacattatgatattgaaattttaaatgaatatctatcaaaatta
catagtggtcgtataaaaaacaatttattagatatagaagttatggaaacaagaatttta
gatttaagttctaaaatattttcattagaggaattgttttctacctataaaataaaaaaa
acggaagtactaacttcgggaaatttagcattcaatatcggtttattgtttttaaaaatg
agaggtaagttaaagattagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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