KEGG   Flavobacterium crocinum: HYN56_13120
Entry
HYN56_13120       CDS       T06596                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
fcr  Flavobacterium crocinum
Pathway
fcr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fcr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HYN56_13120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcr03019]
    HYN56_13120
   03009 Ribosome biogenesis [BR:fcr03009]
    HYN56_13120
Messenger RNA biogenesis [BR:fcr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HYN56_13120
Ribosome biogenesis [BR:fcr03009]
 Prokaryotic type
  rRNA helicases
   HYN56_13120
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII
Other DBs
NCBI-ProteinID: AWK05124
UniProt: A0A2S1YM15
Position
complement(2927772..2929679)
AA seq 635 aa
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYDDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSDPLEITVGAKNSGSSTVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKSIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFIAYYKKNRDISVSGGERRERSDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDIFKVDVKEGFSFFNTDPQHTDKVMDVLNNVQLEGRRINVEISKNDGG
GRRDHNNRGGRRDSGRRDGNFAPRREGGFRSDRNSSRDGGSREGGFRSDRNSSAPRREGG
FRSSAPRNENGGSDRAPRRSENFGDSSRPRRSRRD
NT seq 1908 nt   +upstreamnt  +downstreamnt
atgaataaatttgaacaattaggattaaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acggatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgccgacaacagaaatacacaagcattagttttatcgccaaca
cgcgagttatgtttacagattactaacgaacttaaaaactactctaaatacgaaaaaggt
attaatgtggtagcagtttacggaggagctagtataacagaacaagcaagagaaataaag
agaggtgcacaaattattgtggcaactccaggaagaatgcaagacatgattaacagaggt
ctggtaaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgttaaac
atgggattctatgatgatatcgtatctattttatcagatactccagatgaaaaaagcaca
tggttgttttctgcaactatgccgcaagaggttgcaagaattgcaaaacaattcatgagc
gatcctctagaaattactgtaggagctaaaaactctggttcatctacagtttctcacgaa
ttttatttagttaatgctcgtgaccgttacgaagctttaaaacgtttagctgatgctaat
ccggatattttctctgtagttttctgtcgtacaaaaagagacactcaggctattgctgag
aagttaattgaagatggatatagcgctgctgcgttacacggagatttatctcaggcacaa
cgtgacggtgtaatgaaatcgttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgctcgtggtattgacgttgataacgtaactcacgttgtaaactaccaattacct
gatgagattgaaacttacaaccaccgttcaggtcgtactggtagagctggaaaattaggt
acttctattgtaatcgttacaaaaagtgaattacgtaaaatttcttctatcgaaagaatc
atcaaacaaaaattcgaagaaaaatctattccttccggaatcgaaatctgcgaaattcag
ttattacacttagcaaacaaaattaaagatactgaggttgatcacgaaattgacaactat
ttaccagcaatcaacaatgttcttgaagatttatctaaagaagaattgatcaagaaaatg
gtttcggtagaatttaaccgtttcatcgcttattacaaaaagaacagagacatttctgtt
tctggtggcgaaagacgtgaaagaagtgattctgaaccaagagagttcaataataatggt
gcagttcgttattttgtaaacatcggttccagagataactttgactggatgtcattaaaa
gattacttaaaagaaacattagatttaggtcgtgatgatatctttaaagttgatgtaaaa
gaaggattctctttctttaacactgatccacagcatactgacaaagtaatggacgtttta
aacaacgtacaattagaaggtcgtcgtatcaatgttgaaatttctaaaaatgacggcgga
ggaagacgtgaccacaacaaccgtggaggaagacgtgattctggaagaagagacggaaac
tttgctccaagacgtgaaggcggatttagaagtgatagaaattcttcaagagacggaggt
tcacgcgaaggtggttttagaagcgacagaaattcatctgctccaagaagagaaggtggc
tttagaagttctgctccaagaaacgaaaatggtggttctgacagagctccaagacgttca
gaaaactttggcgacagctcaagaccaagaagatcaagaagagattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system