KEGG   Fragilariopsis cylindrus: FRACYDRAFT_188237
Entry
FRACYDRAFT_188237 CDS       T04784                                 
Name
(GenBank) ribonuclease H-like protein
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FRACYDRAFT_188237
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_188237
Enzymes [BR:fcy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     FRACYDRAFT_188237
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FRACYDRAFT_188237
  mRNA degradation factors
   3'-5' decay
    Pan complex
     FRACYDRAFT_188237
SSDB
Motif
Pfam: RNase_T
Other DBs
NCBI-ProteinID: OEU14748
JGI: 188237
UniProt: A0A1E7F999
Position
Unknown
AA seq 233 aa
MNPSSLSTNTGDILTNECLQQFRRGRPIAFDAEFVSVQEEDSELTESGQKQVLRDMRHAL
GRISIFDCPTENVVVDDHVLPREQVVDFLTRFSGIIDEDLDPARSSHRIISTRNAYLQLR
YLLDQGCIFVGHGLKQDFSTVNLIVPPNQIVDTVKIFHQCGKRYVSLRFLSNFVFGRDMQ
QDTHDSVEDARAAYELYCKALIWKKEGIWDQRLQELYNFGEKTSWKLGTKDSS
NT seq 702 nt   +upstreamnt  +downstreamnt
atgaacccttcttctctatctacaaatactggtgacattcttactaatgagtgtttgcaa
caatttcggcgaggacgtccaatagcatttgacgccgaatttgtcagcgtccaagaagaa
gattcggaattgactgagtcaggacagaaacaagtcttacgtgacatgcgtcatgctctt
ggtcggatatctatcttcgattgtcctactgaaaacgttgttgtggatgaccatgtattg
cctcgagaacaggttgtggactttttgactcgattttcgggaattatagacgaagatttg
gatccagcccgttctagtcatcgaattatttcgactcggaatgcttacttgcagttgcga
tacttattggatcagggttgtatctttgtagggcatggactgaaacaggacttcagtaca
gtgaatttgatcgttccgcccaatcagatagtagatactgtgaaaatatttcaccaatgc
ggtaagcgttacgtctctcttcgttttctctccaactttgtttttggacgagacatgcaa
caagacacacacgactcagttgaggatgcacgagcagcatatgaattatattgtaaggcc
ttgatatggaaaaaagaaggtatttgggaccagcgtttgcaagaactatataatttcggg
gagaagacgtcgtggaagcttggtacgaaggatagcagttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (57)   

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