KEGG   Fragilariopsis cylindrus: FRACYDRAFT_271383
Entry
FRACYDRAFT_271383 CDS       T04784                                 
Name
(GenBank) RPB5 subunit of DNA-directed RNA polymerase
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03020  RNA polymerase
fcy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FRACYDRAFT_271383
  09124 Replication and repair
   03420 Nucleotide excision repair
    FRACYDRAFT_271383
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fcy03021]
    FRACYDRAFT_271383
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_271383
Transcription machinery [BR:fcy03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     FRACYDRAFT_271383
  RNA polymerase III system
   RNA polymerase III
     FRACYDRAFT_271383
  RNA polymerase I system
   RNA polymerase I
     FRACYDRAFT_271383
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FRACYDRAFT_271383
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-ProteinID: OEU09561
JGI: 271383
UniProt: A0A1E7EUB4
Position
Unknown
AA seq 227 aa
MADVMMDTDDSAAIAAPTVRGGLNPDAARLFRVYRTISNMLNSRGYMVPKEMRDMTPMSF
KARFGEHPGRESLTILVEKADDETNQLFVFFSEEEKVGVRPIKVITDRMRAEGVTNAIMV
LRVDITPFAKSALSEMSDSFRIEHFKEVELLVDITQHQLVPVHQVLTQTEKSELLKRYRL
KETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRVCLGG
NT seq 684 nt   +upstreamnt  +downstreamnt
atggcagatgtaatgatggataccgacgactctgcagcaattgctgcaccaactgtcaga
ggtggacttaatcctgacgcagctcgattgtttcgtgtttatcggactatatccaatatg
ttgaatagtaggggatatatggtaccaaaggaaatgcgcgacatgacaccaatgtcattt
aaggcaagatttggtgaacatccaggtagagaatcattaacaattttagttgaaaaggca
gacgatgaaacgaatcaattatttgtattcttctccgaggaggaaaaggttggagtacga
cccattaaggtcattaccgatcggatgagagcggagggtgtaacgaatgcgattatggtt
ttgcgcgttgatataacaccatttgccaagtcagcattaagtgaaatgagtgatagtttc
agaattgaacatttcaaggaggttgaactattagttgatattacacagcatcagttagtt
cctgtccatcaggtattaactcaaacggaaaagtcagaactattaaagagatatcgatta
aaggaaactcaattaccaagaatccaaccaaatgatcctgttgcacgttattatggtatg
aaaaggggacaggtcgtgaaaattatccgaccatcagaaactgcgggacgttatgttacc
tatcgtgtatgtttgggaggttaa

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