KEGG   Ferrovibrio terrae: FNB15_13360
Entry
FNB15_13360       CDS       T06089                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fer  Ferrovibrio terrae
Pathway
fer03030  DNA replication
fer03410  Base excision repair
fer03420  Nucleotide excision repair
fer03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FNB15_13360 (ligA)
   03410 Base excision repair
    FNB15_13360 (ligA)
   03420 Nucleotide excision repair
    FNB15_13360 (ligA)
   03430 Mismatch repair
    FNB15_13360 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fer03032]
    FNB15_13360 (ligA)
   03400 DNA repair and recombination proteins [BR:fer03400]
    FNB15_13360 (ligA)
Enzymes [BR:fer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FNB15_13360 (ligA)
DNA replication proteins [BR:fer03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FNB15_13360 (ligA)
DNA repair and recombination proteins [BR:fer03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FNB15_13360 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FNB15_13360 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FNB15_13360 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FNB15_13360 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD HHH_5 PTCB-BRCT RUBY_RBDX
Other DBs
NCBI-ProteinID: QDO98195
UniProt: A0A516H375
Position
2742120..2744225
AA seq 701 aa
MSRQRAKPVADLSPRQASLEHARLEEEIAVHDKRYHQQDAPTVSDAEYDALKKRLLELET
TFPELKTLTGVSSRVGAAPAAGFAKVKHSKPMLSLDNAFAEEDVADFLGRIRRFLNLKDG
DDLALVAEPKIDGLSASLRYENGELVRAATRGDGQEGEDVTANIRTLKQDVPHKLSGKGW
PDVLEVRGEVYMTRADFLKLNEAQEAASQKIFANPRNAAAGSLRQLDASITAKRPLRFFG
YSWGEVSAPFTGKLSDVRQKLDSWGFTLNPHVELCHSVDDLMAYYNDIGAKRAKLAFDID
GVVYKVDRLDWQERLGFISRSPRWAVAHKFPAEQAQTVLENIDIQVGRTGTLTPVAKLRP
VNVGGVLVSNATLHNEDEIRRKDVRIGDTVVIQRAGDVIPQVVSVVLDKRHKGAKEYEYP
TKCPVCGQPAEREVDASGAEDVRRRCTGGVSCPAQAMEGLRHFVSRNAFDIEGIGEKQIA
AFYEWGWIKEPADIFKLPKQHSADLRKKEGYGDTSVDNLIRSIDQRRSIGFDRFLFALGI
RHVGQERARLVAMHYETPQRWLAAMDEAEARHGEAWGDLNSIDKMGDVVAEAILGFATRK
QSRNVIDHLLKELTEVVPPAKPTTDSAVAGKTVVFTGSLEKFTRDEAKARALSLGAKVAG
SVSKKTDYLVAGPGAGSKLAEAQKHGVAVLSEDDWLALIGG
NT seq 2106 nt   +upstreamnt  +downstreamnt
atgagtcgtcagcgtgcgaaaccggtggccgatctcagcccccgtcaggccagcctggag
catgcccggttggaagaagagattgccgtccatgacaagcgctatcaccagcaggatgcg
ccgacggtgtcggacgccgagtatgatgcgctgaaaaagcgcctgctcgaactcgaaacg
acattccccgagctcaagaccctgaccggtgtctccagccgggtcggcgcggcccccgcc
gccggcttcgccaaggtgaagcacagcaaaccgatgctgtcgctcgacaatgctttcgcc
gaagaagatgtcgccgattttctcggtcgcatccgccgcttcctcaacctgaaggacggc
gacgacctcgcgctggtggccgagccgaagatcgacggtctgtcggctagcctgcgctac
gagaatggcgaactggtgcgcgccgccacccgcggcgacggccaggaaggcgaggatgtc
accgccaatatccgcacgctgaagcaggatgtgccacacaagctgagtggcaaaggctgg
cccgacgtgctggaggtgcgtggcgaagtctatatgacgcgcgccgatttcctgaaactg
aacgaagcgcaggaagccgccagccagaaaatctttgccaatccgcgcaatgccgcggca
ggcagtctgcgtcagcttgatgcttcgatcaccgcgaaacgcccgctgcgcttcttcggc
tacagctggggcgaggtgtccgcgcctttcaccggcaagctcagcgatgtgcgccagaaa
ctcgacagctggggcttcacgctcaatcctcatgtggaactctgccacagcgtcgacgac
ctgatggcttattacaacgacatcggcgcgaagcgcgccaaactggccttcgacatcgat
ggcgtcgtctacaaggtcgatcgcctcgactggcaggagcggctcggctttatcagtcgt
agcccgcgctgggcggtggcgcataaatttcccgccgaacaggcgcagaccgtgctggag
aatatcgatatccaggtcggccgcaccggcacgctcacgccggtcgccaagctcaggccg
gtcaatgtcggcggcgtgctggtatcgaatgccacgctgcacaatgaagacgagatcagg
cgcaaggatgtacgcatcggcgacacggtggttatccagcgcgccggcgatgtgatcccg
caggtggtcagcgtcgtgctggacaagcggcacaagggcgcgaaggaatatgaatacccg
accaaatgcccggtctgcggccagccggccgagcgcgaggtggatgcgtcaggcgccgaa
gatgtgcggcggcgatgcaccggtggtgtgtcctgcccggcccaggcgatggaaggcctg
cgccatttcgtctcgcgcaatgccttcgatatcgagggtatcggcgagaagcagatcgcg
gccttttacgaatggggctggatcaaggaaccggccgatatcttcaaactgccgaagcag
cattccgccgacctgcgcaagaaggaaggctatggcgatacctcggtcgacaacctgatc
cggtctatcgaccagcgccgcagcattggtttcgaccgtttcctgttcgcgcttggcatc
cgccatgtcgggcaggagcgcgcgcggctggtggcgatgcattacgagacgccgcagcgc
tggctggccgccatggacgaggccgaggcgcgccatggcgaggcctggggtgacctcaac
agcatcgacaagatgggcgatgtggtggccgaggccattcttggttttgccacccgcaag
cagagtcgcaatgtgatcgatcatctgctgaaagaactcaccgaggtcgtgccgccggcg
aagccgaccacagattccgctgtcgccggcaagacggtcgtgttcaccgggtcgctggag
aaattcacccgcgacgaggccaaggcgcgtgcgctcagcctcggcgccaaggtggctggt
tcggtgtcgaagaagaccgactatctcgtcgccggtcccggcgccggctcgaaactggcc
gaggcgcagaagcatggtgtggcggtgttgagcgaagatgactggctcgcgctgatcggc
gggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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