KEGG   Fusobacterium gonidiaformans: C4N16_05570
Entry
C4N16_05570       CDS       T05460                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
fgo  Fusobacterium gonidiaformans
Brite
KEGG Orthology (KO) [BR:fgo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:fgo03009]
    C4N16_05570
Enzymes [BR:fgo01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     C4N16_05570
Ribosome biogenesis [BR:fgo03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    C4N16_05570
SSDB
Motif
Pfam: tRNA_U5-meth_tr Cons_hypoth95 Methyltransf_31 TRAM MTS Methyltransf_15 DUF6382 N6_N4_Mtase Ubie_methyltran
Other DBs
NCBI-ProteinID: AVQ17027
Position
1088545..1089915
AA seq 456 aa
MVKLSQKIELTIDKIVFGGEGLGYFQEFAIFVPMATIGDVVEAEVISVKKHYARALISKI
IKVGKDRVEGNRISFEEFQGCDFAMAKYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIAS
PEEKHYRNKVIEPFSKHKGKIITGFFQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQE
KLSVYDEKKHQGLLRNIMIRTNSSQEAMLVLIVNAKKIEESLKKILLQMPKNIPELKSIY
LSLNTRKTNVVLGDKNICIWGEKTLKEELFGIHFHISPTSFFQINVPQTKHLYEKALSLI
PKIENKNVVDAYSGTGTIGMLLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFICGP
VEVELDRLLEEGKNLDAIVFDPPRKGIEKSILRKVAEVGIPEMVYISCNPSTLARDLKIM
AECGYQVGEIQPFDMFPQTSHVESVVLMSRNPEEKH
NT seq 1371 nt   +upstreamnt  +downstreamnt
atggtaaaactttctcaaaagattgagttaacaatagacaagattgtatttggtggcgaa
gggcttggttatttccaagaattcgccatttttgtacctatggcaaccataggagatgtt
gtagaagcagaggtaatttctgtaaagaaacactatgcaagagctttgatttctaagatt
atcaaagtgggaaaagatagggtagaaggaaatcgaatcagttttgaagaatttcaaggc
tgcgactttgctatggcaaaatatgaggctcaattacagtataagacagctatggtaaaa
gaagtcatggaacgaattggaaaattgaactcgaatctagttttggattgtattgccagt
ccggaagaaaaacattatcgaaataaagtgattgaaccattttcaaaacacaagggaaaa
ataatcacaggtttctttcaaagaaggtcacatgaggtctttgaagtcgaagaaaatatg
ttaaattcaaaactgggaaataaaattattgaaacatttaagcaatatgccaaccaagaa
aagttatctgtctatgatgaaaagaaacatcagggattgttacgaaatattatgataaga
acgaactcttcccaagaagcaatgctagtgctcattgtaaatgcaaagaagatagaagaa
tctttgaaaaaaatcttactgcaaatgccaaaaaatattccggagttgaaatctatttat
ctttctttgaatacgagaaaaaccaatgttgttttaggagataaaaatatctgtatttgg
ggagaaaagaccttgaaggaagaattatttggaattcacttccacatttctccaacttct
ttctttcaaatcaatgtccctcaaacaaaacatctttatgaaaaagctctttctttgatt
cctaagatagagaataaaaatgtggtagatgcttactccggaacgggaaccattggaatg
ttattatctagaaaagcaaagaaagtctatgccattgagatagtagaatcagcttcacga
gatggagcaaaaacagcaaaagaaaatcatattgataatattgaatttatctgtggtcct
gtggaagtagaattagatagattgctagaagaaggaaagaacttggatgccattgttttc
gatcctcctcgaaaaggaattgagaaatctattttacgaaaggtagctgaggtcggtatt
ccggaaatggtctatatttcttgtaatccttctaccttagcacgagatttaaaaattatg
gcagaatgtggatatcaagttggggaaatccagccttttgatatgtttcctcagacctcg
catgtggagagcgtagtattgatgtcaagaaatccagaagaaaagcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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