KEGG   Fusarium graminearum: FGSG_01656
Entry
FGSG_01656        CDS       T01038                                 
Name
(RefSeq) ATP-dependent RNA helicase DOB1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
fgr  Fusarium graminearum
Pathway
fgr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fgr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FGSG_01656
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fgr03019]
    FGSG_01656
   03041 Spliceosome [BR:fgr03041]
    FGSG_01656
   03009 Ribosome biogenesis [BR:fgr03009]
    FGSG_01656
   03016 Transfer RNA biogenesis [BR:fgr03016]
    FGSG_01656
Enzymes [BR:fgr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     FGSG_01656
Messenger RNA biogenesis [BR:fgr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     FGSG_01656
Spliceosome [BR:fgr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    FGSG_01656
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    FGSG_01656
Ribosome biogenesis [BR:fgr03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    FGSG_01656
Transfer RNA biogenesis [BR:fgr03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    FGSG_01656
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII AAA_22 DUF5688 Glyco_hydro_65C
Other DBs
NCBI-GeneID: 23549086
NCBI-ProteinID: XP_011317481
UniProt: I1RDG0
Position
1:5506632..5509965
AA seq 1094 aa
MDELFDVFEGNVEAPSASEDESRQNRKGDKTKKRKANAINGKHGDADKSEDVDMDNNTTE
ESKDEASSDDESSEESASQQDAKRRKKEEAVGPVITDTFQTAESREVAGAATFTEQDSSL
VLSHNIQHQVALPPDLDYEYVPLSEHKAPEQPARTWNFKLDPFQSLSVASIEREESILVS
AHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGDVTINP
TASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYV
FLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKSNFNE
QNFNKVMQEVEEKKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTIKKKFNPV
IVFNFSKRECENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLE
RGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKR
RPLTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNM
ILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKELMSLQQERDSTSIADESTVKDYYQI
RQQLSAYTRDMRTVIQHPNYSISYLQPGRLVQIYNPKDKNESIAGNGTDFGWGVIVNQTP
RRAPKLNEPEYIPQEAHVIDVLLPISRSSADFHPGHPAEEMPPGIKPCNDDDDIKFAVVP
CLLTCIKAISQIRLFLPKEGLKSDSDKDTLTKSLMEVKRRFPDGLPVLDPIENMEITDDS
FKKLLRKIEVLESRLLANPLHLSPLLPSLWDQYHAKVKLTEKVKETKKSIAKAYSIAQMD
ELKSRKRVLRRLGFINDAEVVQLKARVACEVSSTEGHELLLSELLFDRFFNEQTPEMCAA
VMSCFIFDEKVEAPALKEELQKPYREIQAKARIIAKVSQECKLDVNEEEYAQKLKWQLME
TVYTWAQGRPFVEICKMTNVYEGSLIRLFRRLEELLRQMAQAAKVMGNEDLTKKFEESLS
KIRRDIVAAQSLYL
NT seq 3285 nt   +upstreamnt  +downstreamnt
atggatgaattgtttgatgttttcgagggcaatgtggaggccccgagtgctagcgaggac
gagtcgcgacagaaccgcaagggcgacaagacaaagaagagaaaggccaacgcgataaac
ggcaagcacggcgacgcggacaagtctgaggatgtcgacatggacaacaacaccaccgag
gaatcaaaggatgaggcatcatccgacgacgagtcttccgaggaaagcgccagtcagcag
gacgccaagaggaggaagaaggaggaagctgtaggccctgttattacagatacgttccag
acggccgagtcaagagaggtcgctggtgcggccacctttacagagcaggattcatctctc
gttttgtcgcacaacattcagcatcaggttgctctgcccccggatctagactacgaatac
gtccctctttccgagcacaaggcccccgagcagcccgcgcgaacatggaacttcaagctc
gatcctttccagagtctctccgtggcgtctattgaacgtgaggagagtattcttgtctcc
gcgcatacttctgccggaaagactgtcgtggccgagtacgccgtcgcgcaatgtttgaag
cgtaaccagagagtcatctacacaagtcctatcaaggccttgagtaaccaaaagtaccga
gatttcgaggccatcttcggagatgttggtctcatgactggagatgttactattaacccc
acagcaagttgcttggtcatgactactgagattttgcgatctatgttgtatcgaggttcc
gagatcatgcgagaagttgcctgggtcgtgttcgacgagattcattacatgcgagacaag
acgagaggtgttgtctgggaggagaccatcatcatgcttcccgacaaggtccgatacgtc
ttcctttctgccaccattcccaacgctttccagttcgccgagtggattgccaagattcac
caccaggcctgtcacgtcgtatacaccgatttccgaccaacaccacttcagaactacttc
ttccctgccggcggcagtggagctagacttatcgtcgacgagaagagcaacttcaacgag
caaaacttcaacaaggttatgcaagaggtcgaggagaagaagggtgctgaccccaacgat
cccaacgcgcgacagaaaggaaagggcaagaacaagaagactaacaagggtggcgctgac
aatggctcggatattgccaagattattcgaatgaccatcaagaagaagtttaaccccgtc
attgtcttcaacttcagcaagcgagagtgcgagaacatggctatgaacatttcctcactg
agcttcaacgacgattctgaaaaggccatggttcgcaaggttttccacaatgctatagag
agcttgtcagagcaggacagggagcttcctcagattatcaacttgctgcctctgttggag
cgtggtattggtgtccatcactctggtcttctgcctattctcaaggagaccatcgagatt
ctgttccaggagtctttgatcaaggttctttttgctaccgagaccttctccatcggtctc
aacatgcctgccaagactgttgttttcacacaagtcaccaagtgggacggtgtcaagagg
cgtcctcttacttcatccgagtacattcagatggctggtcgtgctggacgtcgtggcctc
gatgcccgtggtattgtcatcatgatgattgacgacaagcttgagcccgatacagccaag
gagattgttaccggacaccaagatcgactcaactctgctttctacctcggttacaacatg
attctgaaccttctccgtatcgaagctatctcacccgaattcatgttggagcgatgtttc
catcagttccaaaacgccgctagcgtcccgtccctggagaaggagttgatgtctttgcag
caggagcgcgacagcaccagcattgccgacgagtccaccgtcaaggattactaccagatt
cgacagcagctcagtgcttacacgagggatatgcgaactgtcattcagcaccccaactac
agtatctcatacctccagcctggccgcttggtacagatctacaaccccaaggacaagaac
gagtctattgccggcaacggaaccgactttggctggggtgttattgtcaaccagactcct
cgtcgcgcccctaagctgaacgagcccgagtatattccccaggaggcccatgtcattgac
gttctccttcctatttccaggtcaagcgcggatttccacccaggacaccctgctgaggag
atgcctcccggcattaagccctgcaacgacgacgacgacatcaagttcgcagttgttcct
tgtctgttgacctgcatcaaggcgatcagccagatccgacttttcctgcctaaggaaggc
ctgaagagcgactctgacaaggatacgctcaccaagtccctgatggaggtcaagcgtcgt
ttccctgatggtctccctgtccttgatcctattgagaacatggaaatcaccgacgactct
ttcaagaagcttctgcgaaagattgaggtccttgagtctcgacttttagccaaccctctc
cacctttcccctcttctcccttcgctatgggatcagtaccatgccaaggtcaagcttaca
gaaaaggtcaaggagacaaagaagtccatcgccaaggcatacagcattgctcagatggac
gagctcaagtcgcgcaagcgtgtcctgcgtcgtctaggctttattaacgacgccgaagtc
gttcaactcaaggcccgtgtcgcttgtgaggtttcttccactgaaggtcacgagcttctc
ctttccgagttactgtttgaccgattcttcaacgagcaaacccccgagatgtgcgctgcc
gtcatgagttgctttatctttgatgagaaggtcgaggcccctgctctgaaggaggagctc
cagaagccctaccgcgagatccaggccaaggcccgcatcattgccaaggtcagccaggag
tgcaagcttgatgtcaacgaggaggaatacgcgcagaagctcaagtggcaactgatggag
acggtttatacatgggcccaaggtcgtccatttgtcgagatttgcaaaatgacaaatgtc
tacgaaggctcacttatccgtcttttccgtcgtctggaagagcttcttcgacagatggcc
caggctgccaaggtcatgggcaacgaggatctgactaagaagttcgaggagagtctgtcc
aagatccgcagagatatcgttgccgcccagagtctgtacctataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (52)   

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