KEGG   Candidatus Filomicrobium marinum W: BN1229_v1_1490
Entry
BN1229_v1_1490    CDS       T03856                                 
Symbol
sbcC
Name
(GenBank) SbcC exonuclease
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
fil  Candidatus Filomicrobium marinum W
Brite
KEGG Orthology (KO) [BR:fil00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fil03400]
    BN1229_v1_1490 (sbcC)
DNA repair and recombination proteins [BR:fil03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BN1229_v1_1490 (sbcC)
    Archaeal homologous recombinant proteins
     BN1229_v1_1490 (sbcC)
SSDB
Motif
Pfam: AAA_23 SbcC_Walker_B SMC_N AAA_29 EAD9 AAA_21 nSTAND3 ABC_tran AAA_22
Other DBs
NCBI-ProteinID: CFX15368
UniProt: A0A0D6JDG0
Position
1:complement(1425475..1429266)
AA seq 1263 aa
MRILAIRGANLASLADEFEIDLRAEPLASAGLFAITGDTGAGKSTILDALCLALYGQFPR
VAIDKLESVRDPSGRDITAKDARAILRRGAAQGYAEVDFLGQDGKQYRARWEVRRARGKA
DGNLQNAERRLDSLEDGSSIATGQKDVSQAVEACTELTFAQFRRTVLLAQGEFDAFLLAA
ENERAELLEKITGTEIYGRISEQVNSGTKERANETKALEQRRADIGLMEEDVRTKLESEL
AERSALSESQSVQLKDLTERLKHAERLKDARAQAYNAETGLAAAKQRLDEARDDIARLER
LDAAEPLRAKAEAERLSERKLAEARRHAELCEVAVRQSEQNAASAARTLKEASEASTKAD
ADVEKFTPLWREAEQADSQIANAASELEAAQAAVAQAQRQADACASDHEKIEVQRSGLNE
QLAQTLNELETRSTHALLADRLEDITSRIDDRAELRRREAVAKKELFSATEEDARLQPLI
AAAEEEVAAYASRRSQISAQLNELREALSQIDETSLSEHDARLRDGLELLRQAREIARQH
SDAAATVSEADVLRLAQEKALAEASDMIRQAQAQHADWLARRSEVSGLFELAEKTQSQHA
VALRSALITGQPCPVCGGLDHPYSELGHPEGEMVAQMRARRAELDQAIAATAKDITTWQG
AEERARAQCEVAARRGEDATARCLDAQNKFEALAPQLSQFCVAENLPLPIGPGIDAKAAS
ALDGLKADAEAIQRGLREPLAQAVSLRGEADALQKTLDEISEDSERVAAQIQKDRDAKAS
VRAKCGQLETQLASLAEQLASIARELTPYLSTAGLALDDLDRDSLAAQQHVADLATSYAK
LRDARASLDAEQQKLEMSQREIHLGWEKAKASLGSSLLAQSQREQRLQEAKTARASMLGG
EATDTHRARFTQAAKEAQVALSAAQAAHSEADKKLELSKALLDGALRAIDASVQDFATAQ
EVFANAISVAAMNRDEIYALLAIPQEERELLRSQINALQTKLTEATIALTHRRQEVERLQ
GEREEETDLVALTEAVTTLNAEIEDIRNRVAAIQAELKQDNQARASAADIGRQLEAAREE
LEIWRRVDDAIGSADGNKFRRFAQGVTLDQLVQLANVQISELNPRYQLARATTSDLALHV
IDRDMGDEVRSLRSLSGGERFLVSLGLALALSGLEGRQSFVDTLFIDEGFGALDAETLDM
AIDALETLQGHGRKVGVITHVAAMVDRIAVQIRVEKRGGGRGVVRVVDAGFNDASAFAVF
AEA
NT seq 3792 nt   +upstreamnt  +downstreamnt
atgcgtattctggccatccgcggcgcgaacctcgccagccttgcagacgagttcgagatt
gaccttagggcagagccactcgcgagcgcaggtctctttgcgatcaccggtgataccggg
gccggcaaatcgacgatcctcgatgcgctgtgtctggcgctctatgggcagtttccgcgt
gtcgcgatcgacaaactcgagtccgtcagggatcccagcggcagagacataaccgcgaaa
gatgcacgcgcgatcctccgtcgcggcgccgcccaaggttatgccgaggtcgattttctt
ggacaggatggcaagcaataccgcgcgcgatgggaagtccgacgcgcacgtggaaaagcg
gatggcaatctgcagaacgccgaacgcaggcttgattccctcgaagacggcagctcgatt
gcgacggggcagaaggacgtttcccaagccgtcgaggcgtgtaccgaactcacgtttgcg
cagttccggcgcacggttctgcttgcgcagggtgagttcgacgcgttcctgctcgctgcc
gaaaacgagcgcgcggagcttctcgagaaaattaccgggaccgagatttacgggcgaatc
tcggaacaggtgaactccggcacgaaagaaagggccaacgaaacgaaggctctcgaacaa
agacgtgccgacatcggcttgatggaagaggacgtacgcacaaagctggaaagcgaactc
gcggaacgtagcgctttaagcgagagccaaagtgtccaactgaaggacctcaccgagcgt
ctaaagcatgctgagcggctgaaggatgcgcgcgcacaagcgtacaacgccgaaaccgga
cttgccgcagcgaaacagcgtttggacgaagcccgggacgatattgcgcggctcgaacgc
ctcgatgcggccgaaccattgcgagctaaggccgaagcggagcggttgtccgaacgcaag
ttggccgaggctcggcgtcacgccgaactttgcgaagtggcggtacggcaatctgagcaa
aatgcagcatctgctgcgcgcacactcaaagaggcgtccgaagcctccacaaaggctgat
gcagacgtcgaaaaattcacacctctttggcgtgaagccgagcaagctgatagccaaatc
gctaacgctgcaagcgagcttgaagctgcgcaggcggcggtcgcgcaggcccaacggcag
gccgatgcctgcgcttcggatcacgagaagatcgaggttcagcgttcagggctcaacgag
caacttgcgcagacgctgaatgagctggagacgcgttcgacccatgcgttgctggcggac
cggctggaagatatcacgtcacgtattgatgaccgcgccgaactccggcggcgggaagcc
gttgcaaaaaaagagctgttttcggctacagaggaagatgcgcgcctgcagcccttgatt
gcggcggcggaggaggaagtcgcggcatacgccagccgacgcagccagatttccgctcaa
ttgaatgagctgcgcgaggctctgtcccagatcgatgagacgtctctctccgaacacgat
gcgcggctgcgcgatggactcgaacttctccggcaagccagagaaatcgcgcgccaacac
agcgatgcggcggcgacggtttctgaggcggacgtgctgcggttggcgcaagaaaaggcg
ctcgcagaagcctctgacatgatccgacaggcgcaagcacaacatgccgactggctggcc
cggcgcagcgaggtcagcggcctgttcgagttggccgagaaaacccaatcgcagcacgca
gtagccttgcggagcgccctcattaccgggcagccctgtcccgtttgtggcggcctggac
cacccctattccgaactcggtcatcccgaaggtgagatggtggctcagatgcgtgcgcgg
cgtgctgagctcgatcaagccatcgccgcgacagccaaagatataaccacctggcaaggc
gcggaggagcgcgcgcgcgctcagtgtgaggtcgcagcgcgacgtggtgaagacgcaacg
gccagatgcttagacgcgcagaacaagttcgaagcgctggctcctcaactgagccagttt
tgcgtggccgagaacctgccgcttccaatcggtcccggaatcgatgcaaaggcggcatcg
gcgctcgacggtttgaaagctgatgctgaagccatccaacgcggtctacgagagcccctc
gcgcaggcggtttctttgcgtggtgaggctgatgctttgcagaaaacgcttgatgagatc
tcagaagattcagaaagagttgccgctcaaatccagaaagacagagatgctaaggccagc
gttcgggcaaagtgcggacagctggaaacgcaacttgcaagtctggccgaacaactcgcg
tcaatcgctcgggaactcactccctatcttagcactgccggcttggcgctagacgatctc
gaccgcgattccttagctgcacagcagcacgtcgcagaccttgcgacctcatacgccaag
ctccgggatgcgcgcgcatctcttgacgctgagcagcagaagcttgagatgtcgcaaagg
gaaatccacctaggatgggagaaggccaaggcgtctctcggctcctcgctgcttgcgcaa
tcacaacgtgaacagcggctccaagaagccaagacagcgcgcgcgtcgatgcttggcgga
gaagccaccgacacgcatcgggcacgtttcacccaagctgcgaaagaagcgcaagtggct
ctctcggcggctcaggcagcacattcagaagcagacaagaagcttgagctcagtaaggct
cttctggacggagcgctcagggctattgatgcatccgtgcaagacttcgcgacggcacag
gaggtcttcgccaacgccatttccgtcgccgctatgaatcgggacgaaatctatgcctta
ctcgccatcccacaggaggaacgcgagcttttgcgcagccagatcaatgccctccaaacc
aaactcaccgaagcaacgattgcgcttacccatcgccgccaggaagtggagcgcctccaa
ggcgaacgggaagaagagacggaccttgttgcactcacagaagctgtgacaacgctcaac
gctgaaatcgaagacatccgcaaccgcgtcgcagccatacaggctgagcttaagcaagat
aaccaagcgcgcgccagtgcagcagatattggtcgccagctggaagctgcacgcgaggaa
ttggagatctggcggcgcgtcgatgatgcaatcggatccgccgacggcaacaaattccgt
cgcttcgcgcagggggtgacgctcgatcagctcgtgcagctggccaatgtacagatcagt
gagctcaacccgcggtatcagctggcgcgcgccaccacatcggatctcgcgctccatgtg
attgatcgcgatatgggtgatgaagttcgctcgctgcgttcgctgtcaggcggtgagcgc
tttcttgtttcgcttggcctcgcgctcgctctgtcagggcttgaaggacggcaatcgttc
gtcgatacgcttttcatcgatgaaggctttggagcgctcgatgcagaaacgctcgacatg
gccatcgatgctttggaaacgttgcaaggtcatggccggaaggtcggtgtgatcacgcac
gtcgccgcgatggttgaccgtatcgctgtgcaaatccgcgtcgagaaacgtggcggtggg
cgaggtgtcgtgcgcgtcgtcgacgcgggtttcaacgacgccagcgcctttgcggttttc
gccgaagcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (41)   

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