KEGG   Candidatus Filomicrobium marinum W: BN1229_v1_1630
Entry
BN1229_v1_1630    CDS       T03856                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor 2
  KO
K03092  RNA polymerase sigma-54 factor
Organism
fil  Candidatus Filomicrobium marinum W
Pathway
fil02020  Two-component system
fil02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:fil00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BN1229_v1_1630 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BN1229_v1_1630 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fil03021]
    BN1229_v1_1630 (rpoN)
Transcription machinery [BR:fil03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BN1229_v1_1630 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR TrmB
Other DBs
NCBI-ProteinID: CFX17601
UniProt: A0A0D6JEY3
Position
1:complement(1550873..1552405)
AA seq 510 aa
MALTAKLELRQGQQLVMTPQLQQAIKLLQLSNLELEQYVDGELERNPLLEREEGASGDAN
GESPGSDGDQVNGASLDDDWLDLDKPRSDPDGTFDTDLDNVYPDASAADVSQDMFGSGWA
GLKGRGPGSMSDDDANIEAFVSSSISLKDHLSQQLPLALTEPAHRIIGQYLIDLVDDAGY
LNADLDELSEKLGAPESMVEEVLEALQKFDPPGVFARSLGECLELQLKELNRYDPQIAAL
LDNLGLVATHDFAKLKRVVGVDMDELTDMITEIKGLNPKPGLMFGSVQVQPVVPDVLVRS
AADGSWLVELNSDTLPRVLVNRSYYARVAKAASTGDDKEYLSDCLQTANWLVKSLDQRAR
TILKVAQEIVRQQDGFFTYGVQYLRPLNLKTVAEAISMHESTVSRVTSNKYMATSRGIFE
LKYFFTSSISAADDGEAHSSEAVRFRIKQLIDGETSNLILSDDKIVDLLRSDGIDIARRT
VAKYREAMRIPSSVQRRREKRLSGVTARAT
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggcgctgacggccaaattagagctgagacaaggccagcagctggtgatgacaccccag
ctgcagcaggccattaagctcttgcagctgtctaatcttgaactcgaacagtatgttgac
ggcgaactggagcgcaatccgctgcttgagcgcgaagagggcgcttctggggacgcgaac
ggtgaaagccccggaagtgatggcgatcaggttaacggcgccagtctcgacgatgattgg
ctcgacctcgataaacctcgctccgaccctgatgggacgttcgacaccgacctcgacaac
gtttatccggacgcctcagcagccgacgtcagtcaggacatgttcggttccggttgggcc
gggctcaaaggtcgtgggccaggtagcatgtcggatgacgatgccaacattgaagcgttc
gtctccagcagtatttcactgaaagaccatctcagccagcagttgccgctcgcacttacc
gagccagcgcatcggatcattggccaatatctcatcgatcttgtcgatgatgccgggtac
ctcaacgcggatctcgatgagttgtccgaaaaacttggcgcgcccgaatctatggtcgaa
gaggttctcgaggcgttgcagaaattcgatcctcccggtgtttttgcgcgttcactcggt
gagtgtctggagctgcagcttaaagagctcaaccgctacgatcctcagatcgccgccttg
ctcgataaccttgggctagtggcaacgcacgattttgccaagctcaagcgcgtcgtgggc
gtcgatatggacgaactcacggatatgataactgagatcaaggggttaaatccaaaaccc
ggtctcatgtttgggtctgtccaggttcaacctgtcgttccagatgtgctcgttcgatcg
gcagccgacgggagctggcttgttgagctcaactccgacaccctcccgcgtgtgctcgtc
aatagaagttactatgcgcgggtcgcaaaagcggcctctacgggtgatgacaaggaatat
ctcagcgactgcctacaaacggcaaactggcttgtgaagagcttggatcagcgcgctcgc
accattctcaaggtggcacaggagatcgtccgccagcaggacggctttttcacctacggt
gttcaatatctgcgccccctcaatctcaaaaccgtcgctgaagcgatctcgatgcatgaa
tcgacggtgtcgcgcgttacgtccaacaagtatatggcgacgtcacgcggcatcttcgag
ctcaagtatttctttacctcctccatctcagctgccgacgacggagaggcacattcgtcc
gaagccgttcgcttccggatcaagcaattgatcgatggcgaaacgtcaaacctgatctta
tctgacgataaaatcgtggatctgctgcgcagtgacggcatcgacatcgcccggcgcacc
gtcgccaaataccgggaagcgatgcgaatcccttcgtcggtgcagcggcggcgtgaaaaa
aggctgagcggagttaccgcacgtgcgacgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (40)   

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