KEGG   Candidatus Filomicrobium marinum W: BN1229_v1_3018
Entry
BN1229_v1_3018    CDS       T03856                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
fil  Candidatus Filomicrobium marinum W
Pathway
fil03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BN1229_v1_3018 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fil03021]
    BN1229_v1_3018 (rpoZ)
   03400 DNA repair and recombination proteins [BR:fil03400]
    BN1229_v1_3018 (rpoZ)
Enzymes [BR:fil01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BN1229_v1_3018 (rpoZ)
Transcription machinery [BR:fil03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BN1229_v1_3018 (rpoZ)
DNA repair and recombination proteins [BR:fil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BN1229_v1_3018 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: CFX42359
UniProt: A0A0D6JIK8
Position
1:complement(2945151..2945576)
AA seq 141 aa
MARVTVEDCVDKIPNRFELVLLAAHRARNISGGSSITIDPDNDKNPVIALREIAEETIPP
EDMREGLIHTLQRNVEVDEPEAGAAPVLAVERRAPMLGRDDQSSDNVVDVLTEEQLLRGL
ETMTPMEPSASGGNGPRDRGR
NT seq 426 nt   +upstreamnt  +downstreamnt
atggcacgcgtcaccgttgaggattgcgtcgataaaatccctaaccgctttgagcttgtc
ttgctcgcggctcaccgcgctcgcaacatttcgggcggcagctcgattacgattgatccc
gataacgacaagaatccggttatcgcacttcgtgaaattgcggaagaaacgattcctccc
gaggacatgcgcgaaggtcttatccacacgttgcagcgtaacgtggaagtcgacgaaccc
gaagccggcgcggcaccggtgctcgcagttgagcgacgcgcgccaatgttgggtcgcgat
gatcaatcgagcgacaacgtcgttgatgttttgacggaagagcagcttctgcgcgggctt
gagaccatgacccctatggagccatcagcctccggcggcaatgggcctcgtgatcgcggc
cgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system