KEGG   Flavobacterium johnsoniae UW101: Fjoh_2438
Entry
Fjoh_2438         CDS       T00508                                 
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
  KO
K10773  endonuclease III [EC:3.2.2.- 4.2.99.18]
Organism
fjo  Flavobacterium johnsoniae UW101
Pathway
fjo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:fjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Fjoh_2438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fjo03400]
    Fjoh_2438
Enzymes [BR:fjo01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Fjoh_2438
DNA repair and recombination proteins [BR:fjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Fjoh_2438
 Prokaryotic type
     Fjoh_2438
SSDB
Motif
Pfam: HhH-GPD HHH RecR_HhH
Other DBs
NCBI-ProteinID: ABQ05465
UniProt: A5FH51
Position
complement(2923793..2924449)
AA seq 218 aa
MNKEARVQFVINTLKELYPTIPVPLDHKDPYTLLIAVLLSAQCTDVRVNQITPLLFAKAD
NPYDMVKMSIEEIKEIIRPCGLSPMKSKGIHGLSEILIEKHNGEVPQSFEALEELPAVGH
KTASVVMSQAFGVPAFPVDTHIHRLMHRWNLSNGKSVAQTEKDAKRLFPRDLWNDLHLQI
IWYGREYSPARGWSLEKDIITRTVGKKSILEEAAKKKV
NT seq 657 nt   +upstreamnt  +downstreamnt
atgaataaagaagcccgcgtacaatttgttataaataccttaaaagaactctaccctact
atacctgttccgcttgaccataaagatccatatactttattaattgccgtattgctttct
gctcaatgcacagatgtacgtgtgaaccagattacacctcttttgtttgcaaaagcagat
aacccgtatgacatggtgaagatgtcgattgaagaaattaaggaaattattcgtccgtgt
ggtttatcgccaatgaaatcaaaaggaattcatggtttatctgaaatattaattgaaaaa
cataatggagaagtaccgcagagttttgaagcgcttgaagaattaccagctgtaggacac
aaaacagcaagtgttgtaatgtctcaggcttttggcgttccggcatttcctgtagataca
catattcatagattgatgcacagatggaatttgtcgaacggaaaaagtgtagctcagact
gaaaaagatgctaaacgattattcccaagagatttatggaacgatttgcatttacagatc
atttggtatggccgagaatattctcctgcccgtggatggagtcttgaaaaagatattatt
accagaactgtcggcaaaaaatcaatattagaagaagctgctaaaaagaaagtctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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