KEGG   Fomitiporia mediterranea: FOMMEDRAFT_108365
Entry
FOMMEDRAFT_108365 CDS       T03132                                 
Name
(RefSeq) prokaryotic type I DNA topoisomerase
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    FOMMEDRAFT_108365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fme03032]
    FOMMEDRAFT_108365
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_108365
Enzymes [BR:fme01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     FOMMEDRAFT_108365
DNA replication proteins [BR:fme03032]
 Eukaryotic type
  DNA Topoisomerases
   FOMMEDRAFT_108365
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     FOMMEDRAFT_108365
   FA (Fanconi anemia) pathway
     FOMMEDRAFT_108365
SSDB
Motif
Pfam: Topoisom_bac zf-GRF zf-CCHC Toprim zf-CCHC_2 zf-CCHC_3 Mucin
Other DBs
NCBI-GeneID: 18670345
NCBI-ProteinID: XP_007266922
JGI: Fomme1_108365
Position
Unknown
AA seq 1081 aa
MRVLCVAEKPSIARSITGILSGGQYNTRATRNKYIKNYDFDYPQTRSTFTVTAVSGHLME
HDFDEAYRSWGSCDPFTLFEAPVIARIAGDNKTIEENLKKEARRADELMIWTDCDREGEN
IGAEVVRVCRKVNVGIRVTRARFSAIIPQQIHRAAQNPGLLDQAQADAVEARTILDLRLG
AAFTRMQTLNLQRRFEQIKDTGTPVSYGPCQFPTLGFVVSRYEQVQAFVPEAFWYIYLSL
SRSGASVEKGGKKKNGEEETTEFSWRRVRLFDRLAAEAIYEYVVENPVARVTKKTCKPTK
KWKPLPLTTIELQKAGSRLLRLAPKTVLDIAEKLYQRGLLSYPRTETDQYDPQFDFMSLI
GKQTVDPTWGGFATQLQNGEFTSPRKGKNNDKAHPPIHPTNYAGNLAGDEKRVYEFVTRR
FLASCHKDAEGQETTVEVCCGGEYFSASGLIVLARNYLDVYVYDKWNGRYLPNFDEGEQF
MPSICELREGETSSPTLLTEADLVGLMDKNGIGTDATIAQHIQMVTDRGYVIERMEGVVK
YLVPSTLGIGLVEGYNEIGFERSLSKPQLRRDTERAMVQVCERTKSKHDMLEQSIEQYKE
VFIRARREFDKIVTSVSRYLEGDGNRDNNAAGAGGNNPGGGGGGGAGGGGDGGGRGGRGG
RGTRGGRGGTGTTRRGGRGGGSSSRGDGADGGSGPKRARTTGRKKKATASEETVESDIDL
DGPTQVAHQPPPPPVPKLRSRVILVRKSAENQAGPGPSSSSSFSTANQPSRNPAPFRSGS
GPAVEVAQIVQCQCGVQAGERTVVKEGPNKGRRFRKCGKGDECGFFEWIDGPLTSISSTS
FPSGSATSRQMDTHSDSNILRTNNNANRPATSDRRCKCDLAAVQRTVVREGPSKGRNFWT
CPSSNQCGYFEWEEPERSVTAGTRSDECFNCGQSGHWASACPNGAQANRNRAMSIDSSAG
NVNPNPSSSSTACFKCGEEGHYSSACPNGKNSSIGACFKCGDEGHYSNACPNGEPNTRRS
KSTTTTTKSRSTTTTSKSNTASKRGRAGSTSSTSTRGGSKSKSKRGAKGAGRSHFAAADH
Y
NT seq 3246 nt   +upstreamnt  +downstreamnt
atgcgtgttctttgtgtagcagagaagccgtctattgcgcgttcgattactgggatattg
tctggtggacaatataatacgcgagcaacacgaaacaaatacatcaagaactatgacttc
gactacccccaaacgaggtcaactttcacagtcacagccgtctcaggtcaccttatggaa
cacgatttcgacgaggcgtatcgatcatgggggtcctgcgatccattcacactcttcgag
gcccccgtgatagccagaattgctggggataataagacaattgaagagaatttgaagaaa
gaggcgaggagggcggatgagttgatgatttggacggattgtgatcgggaaggagagaat
attggtgctgaggttgttagggtttgtaggaaggtgaatgtggggattagggttacgagg
gcgaggtttagtgcgattattccgcagcaaatccaccgcgccgcccaaaacccaggtctc
ctcgaccaagctcaagcagacgcagtcgaagcgcgtacgatcctcgacctgcgtctcgga
gctgcgtttacgagaatgcaaactctcaacctccaacgtcgattcgagcagattaaagat
actggtacacccgtttcttacgggccttgtcagtttccgactctggggtttgtggtgtcg
aggtatgaacaggtgcaggcgttcgtacctgaggcgttttggtatatctacctatctttg
tcgcggagtggtgcgtcggtggagaaaggagggaagaagaagaatggtgaggaggagacg
acggagttttcgtggagacgagtgaggttgtttgatcggttggctgcggaggctatttat
gagtatgtggtggagaacccggtggcgagggtgacgaagaagacgtgtaagccgacgaag
aaatggaagccgctgccattgacgactattgaacttcaaaaagcagggtcgaggttgttg
aggttggctccgaagacagtccttgatattgcagagaagctctatcagcgtggattatta
tcttatccacgcacggaaacagatcaatatgatcctcaatttgatttcatgtctctaata
ggcaagcaaactgtagatcctacttggggtggattcgcaacgcaacttcaaaatggtgaa
ttcacctctccacggaaaggcaagaacaacgacaaagcgcatcctcctatccatcctacc
aattatgctggaaaccttgctggtgatgagaagcgagtatacgagtttgtgacgaggaga
ttcctagcgtcttgtcacaaagacgcagaaggtcaagaaactactgtagaggtatgctgt
ggtggagaatacttctccgcctcaggccttatcgtccttgcaagaaactacttagacgtc
tacgtctacgacaaatggaacggtcggtacctacccaacttcgacgaaggcgaacaattc
atgccgtcaatatgcgaactcagagaaggcgagacctcttctccgactttgttgactgaa
gcggacttggttgggttgatggataagaatggaattgggacggatgcgactattgcacag
catattcagatggttacggatagggggtatgtgattgagaggatggagggggtggtgaag
tatcttgtaccgtcgactctgggtattgggcttgtggaagggtataatgagattgggttt
gagaggagtttgagtaagccgcagttgaggagggatacggaaagggcgatggtgcaggtg
tgtgaacggacgaagtcgaagcatgatatgctcgagcagagcattgaacagtataaagaa
gtctttattcgggctcggagggagtttgataaaattgttactagcgtcagtcgatatctt
gaaggtgacggaaaccgagataataacgctgctggtgctggaggtaataatccaggtggt
ggcggaggaggaggtgcaggtgggggtggagatggtggaggccgcggaggtcgtggtggt
cgtggaactagaggtggtagaggcggaactggaactacgcgaagaggcggacggggaggc
ggttcttcgagcagaggtgatggtgccgacggaggatcaggtcccaaacgtgctcggaca
acgggtcgtaaaaagaaggctactgctagcgaagaaacggtggagagcgacatcgacttg
gacggacctacgcaagttgctcatcaacccccgcctccacctgtcccgaaacttcgatcc
cgagtaattttagttcgaaaatccgcagaaaatcaagccggaccaggtccatcctcatcc
tcatcattctcaactgccaatcagccttcacgcaatccagctcccttccgatccgggtca
ggccctgctgttgaagtagcacaaatagtacaatgtcagtgcggagtgcaggcaggtgaa
cgaactgttgtgaaagagggtccgaacaaggggaggaggttccgaaagtgtgggaaggga
gacgagtgtggtttctttgagtggattgatggaccgttgacttctatctcttctacctcc
ttcccttctggttctgcgacgtcaaggcaaatggatactcattcggattctaacatctta
cgaacgaataacaacgctaatagacctgctacttcggatcggcgatgtaagtgtgaccta
gcagccgtacagcggactgttgtgcgtgaggggccgagcaagggacggaatttctggacg
tgtcctagttcgaatcagtgtgggtattttgagtgggaggagcctgaacgaagtgtgacg
gctggtactaggtcggatgaatgttttaattgtggacagagtggacattgggcaagtgca
tgtccgaatggtgctcaggccaatcgaaaccgcgcaatgagtatcgactcgtcggcaggt
aacgtcaatccgaatccgtcctcgtcctcgactgcgtgcttcaagtgtggtgaagagggg
cactacagtagtgcctgtccaaatggaaaaaactcgagtattggagcctgctttaagtgt
ggagacgaagggcattatagtaatgcatgccctaacggcgaacctaacactcgaagaagc
aaatccaccactaccactactaaaagccgtagcacgactaccacatctaaaagtaatact
gctagtaaacgaggacgagctgggtcgacgagttcgacttctactcgcggagggagtaaa
agtaaaagtaaacgtggggcgaaaggtgctgggaggtcacattttgctgcagcagatcat
tattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (66)   

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