KEGG   Fomitiporia mediterranea: FOMMEDRAFT_121373
Entry
FOMMEDRAFT_121373 CDS       T03132                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
fme  Fomitiporia mediterranea
Pathway
fme03018  RNA degradation
fme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_121373
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOMMEDRAFT_121373
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_121373
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_121373
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FOMMEDRAFT_121373
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     FOMMEDRAFT_121373
Spliceosome [BR:fme03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    FOMMEDRAFT_121373
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 18671166
NCBI-ProteinID: XP_007265570
JGI: Fomme1_121373
Position
Unknown
AA seq 85 aa
MASQVLPLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEYQYLPEGRKVT
MLRQTLLNGNNICMLIPGSSGPESS
NT seq 258 nt   +upstreamnt  +downstreamnt
atggcctcacaagtgctgccacttgaattgattgatacctgcatcggttctcgcatatgg
gtcatcatgaagaatgatcgcgaatttactggcactttgctgggattcgatgacttcgtt
aatatggtattagatgatgtcacagaatatcaatatttacctgaaggtcgcaaagtgacc
atgttaaggcagacattactgaacggaaacaacatctgcatgttgatcccagggagctca
ggacctgagagctcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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