KEGG   Fomitiporia mediterranea: FOMMEDRAFT_126202
Entry
FOMMEDRAFT_126202 CDS       T03132                                 
Name
(RefSeq) ribonuclease III
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    FOMMEDRAFT_126202
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_126202
   03009 Ribosome biogenesis [BR:fme03009]
    FOMMEDRAFT_126202
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_126202
Enzymes [BR:fme01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     FOMMEDRAFT_126202
Messenger RNA biogenesis [BR:fme03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FOMMEDRAFT_126202
Ribosome biogenesis [BR:fme03009]
 Eukaryotic type
  90S particles
   RNase
    FOMMEDRAFT_126202
 Prokaryotic type
  rRNA processing factors
   FOMMEDRAFT_126202
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     FOMMEDRAFT_126202
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 dsrm
Other DBs
NCBI-GeneID: 18671400
NCBI-ProteinID: XP_007268623
JGI: Fomme1_126202
Position
Unknown
AA seq 441 aa
MRSQLRRVPFRALTSRATRASALHRRFTTSDQSSQVCTAQLYRRIPGRERTGLIETRRSL
SETLNGSFVDIQHHQRASPRLYSSSSSPQSDPGPSSASLDSAPPPPPLASEFEDFLPPPE
PDEIVVLGDVETIFDPSMLALKPDLDATGGLPPLPTIRDEALRRQAFTHRSVYARSRHDF
EDSHSDPAPDNELLEYQGDAVLGLVITDLVRDCYRYLRVGPATKVRSLVVGNATLADISV
KYALPQKLRFHRANASTNKISINIQGKFPDVFEAYVGGLYKDQGLEVVRRWLNPLFLPYV
KEAYRVCRDQHGLPSPPPSPTLPDAQNDGSTTSTPDTLDSSASASQESVSDQLASLQISN
GNNTIGHLALFNQYLQQKRMTVEWVFHAVQDEGTKVTPIWEVRAMVEGEQVSVGRASTKK
GAQSEAAREGLVQLGISNPLE
NT seq 1326 nt   +upstreamnt  +downstreamnt
atgagatcccaacttcgtcgtgtcccgttccgcgctctcacctcacgcgctactagggcc
agtgcactgcatcggcgtttcacaacgtcagatcagtcgtcgcaggtgtgtacagcacaa
ttatacaggcgaataccaggacgcgagagaacagggctcatcgaaaccaggcggagtttg
tcggagactctcaacggaagcttcgtcgacattcagcatcatcagcgggcaagcccccgc
ttgtattcatcctcatcctcccctcagtccgatcccggtcctagttccgcctctcttgat
agtgctcctcctccgcctcctcttgctagcgagtttgaagacttcctacctccgccagag
ccagacgagatcgtcgttctaggcgacgtcgagacaatcttcgacccaagcatgttagcg
ctcaagccggacttagacgcgactggtgggctcccgcctctgccaacaattcgagacgag
gcacttcgtcgacaagccttcacccatcgttccgtctacgcacgctcccgtcatgacttt
gaggactcacacagtgacccggcaccggacaacgaactattggaatatcaaggagacgct
gtcctcggacttgtgatcactgaccttgtccgcgattgctaccgatatctgcgagtcgga
cctgcgactaaagtgaggtctctagtcgtcggaaacgcaacccttgcagacatttccgtc
aaatacgcgctcccacaaaagcttcgattccatcgagcgaacgcgagcactaataaaatt
tcgatcaacatccaaggcaagttcccggatgtatttgaggcgtacgtcggcggtctatac
aaagatcaaggattggaagttgtcaggaggtggcttaaccctcttttcctaccatacgtg
aaagaagcctatcgtgtctgtcgggaccagcatggtcttccctctccgcctccgtctcca
actctaccggatgcacaaaacgatggttctacaacttccacacccgatacacttgattca
agtgcaagtgcaagccaagaatccgtttcggaccagcttgcctcacttcaaatctctaac
ggcaataatacaatcggtcacctagccctattcaaccaatacctccaacaaaagcgaatg
acggttgagtgggtgtttcatgccgtgcaagatgaagggacgaaggttacgccgatttgg
gaggtgagagcgatggttgaaggagaacaagtttctgttggacgggcgagtacgaagaaa
ggtgcgcagagtgaggctgcgagggaggggcttgttcaattgggtatttcgaaccctttg
gaatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system