KEGG   Fomitiporia mediterranea: FOMMEDRAFT_126450
Entry
FOMMEDRAFT_126450 CDS       T03132                                 
Name
(RefSeq) ring-box Roc1/Rbx1/Hrt1 protein
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03420  Nucleotide excision repair
fme04111  Cell cycle - yeast
fme04120  Ubiquitin mediated proteolysis
fme04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    FOMMEDRAFT_126450
   04120 Ubiquitin mediated proteolysis
    FOMMEDRAFT_126450
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_126450
 09140 Cellular Processes
  09143 Cell growth and death
   04111 Cell cycle - yeast
    FOMMEDRAFT_126450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:fme04121]
    FOMMEDRAFT_126450
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_126450
Enzymes [BR:fme01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     FOMMEDRAFT_126450
Ubiquitin system [BR:fme04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   FOMMEDRAFT_126450
  Multi subunit Ring-finger type E3
   SCF complex
    Ring finger protein
     FOMMEDRAFT_126450
   Cul2 complex
     FOMMEDRAFT_126450
   Cul3 complex
     FOMMEDRAFT_126450
   Cul4 complex
     FOMMEDRAFT_126450
   Cul7 complex
     FOMMEDRAFT_126450
   Cul8 complex
     FOMMEDRAFT_126450
   Cul9 complex
     FOMMEDRAFT_126450
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      FOMMEDRAFT_126450
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      FOMMEDRAFT_126450
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_16
Other DBs
NCBI-GeneID: 18671417
NCBI-ProteinID: XP_007268761
JGI: Fomme1_126450
Position
Unknown
AA seq 118 aa
MADMEVDTPVETAPAPSTASKKKADGKDKKRFEVKKWNAVALWSWDIVVDNCAICRNHIM
DLCIDCQANQVSATSEECNAAWGICNHAFHFHCIARWLKTRNVCPLDNREWELQKYGR
NT seq 357 nt   +upstreamnt  +downstreamnt
atggccgacatggaagttgacactcctgttgagaccgcacccgccccatcgacagcatcg
aaaaagaaagctgatggaaaggacaagaagcgtttcgaggttaagaagtggaatgccgtg
gcgctctggtcgtgggacatcgtcgtcgacaactgtgccatctgtagaaaccatattatg
gacctctgcatcgattgtcaagcaaatcaggtatctgcaacatcagaggaatgtaatgcg
gcatggggtatttgcaaccacgcattccacttccattgcattgcgcgatggctaaagact
cggaatgtctgtccgttggataatagggaatgggagttgcagaagtatggtcggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system