KEGG   Fusobacterium mortiferum: C4N19_01760
Entry
C4N19_01760       CDS       T05444                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
fmo  Fusobacterium mortiferum
Pathway
fmo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C4N19_01760 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fmo03021]
    C4N19_01760 (rpoB)
   03400 DNA repair and recombination proteins [BR:fmo03400]
    C4N19_01760 (rpoB)
Enzymes [BR:fmo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C4N19_01760 (rpoB)
Transcription machinery [BR:fmo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C4N19_01760 (rpoB)
DNA repair and recombination proteins [BR:fmo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C4N19_01760 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 DUF3052
Other DBs
NCBI-ProteinID: AVQ17923
Position
complement(351338..354838)
AA seq 1166 aa
MGKLVERLNFGRIKERGSMPHFLEFQLDSYEDFLQAKEAPNNRKDKGLESAFREIFPVES
SNGDIKLEYVAYELHEAEPPLNDELECKKRGKTYSASLKVRLRLINKKSGNEIQESLVYF
GEIPLMTERGTFVINGAERVVVSQLHRSPGVSFNKEINIQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSVKIDRKKKVLATVFLKAIDFFENNTEIKDYFLETKELELTPIFQKYKNREE
LVSVLRTKFEGSFIKEDIYDEETGEIIAEVDAVIDEALIETIIDAKVDKVVYWEVKPEDK
LLANTVLNDTTLTKEDAVTEVFKKLRPGDLVTIESAKSLIRQMFFNPQRYDLEPVGRYKM
NKRLKLNVPDDEILLTKEDIIATMKYVINLNNGNGHTDDIDNLSNRRVRGVGELLLMQIK
AGLSKMGKMVREKMTIQDSETLTPQSLLNTRPLNALILDFFGSGQLSQFMDQSNPLSELT
HKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLAIYAKINKYG
FIETPYIKVVDGKADFDRIEYLAADEEEGLFIAQADTKIGENNELLGEVVCRFGHEIVNI
TGEKVDYLDISPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRTEAPYIGTGLE
RKVAVDSGALVVSKVDGKVVYVDASKIIIEDENGKEHKYRLLNYERSNASMCLHQTPLVS
LGEEVKVGSILADGPATKGGDLALGRNILMAFMPWEGYNYEDAILISDRLRKDDVFTSIH
IEEYEIEARNTKLGDEEITREIPNISEEALRKLDANGIITIGSEVGPGDILVGKTAPKGE
TEPPAEEKLLRAIFGEKARDVRDTSLRMPHGSKGTVVEILELSRENGDELKAGVNKAIKI
LVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLADGTHLDVVLNPLGVPSRMNIGQV
LEVHLGMAMGNYNGGTHIATPVFDGASEEQVKDYLEKLGFPRSGKVDLYDGRTGDKFDNP
VTVGRMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAS
NILQEMLTVKSDDVTGRTKTYEAIIKGEEMPEADLPESFKVLLKEFQALALDVELFDSED
NIINVDEELNKEEVLTEYSPLDDFKD
NT seq 3501 nt   +upstreamnt  +downstreamnt
atggggaaactcgttgaaagattgaattttggaaggataaaagagagaggaagtatgcct
cattttcttgagttccaattggattcctatgaagattttctacaagctaaagaagctcca
aataatagaaaagacaaggggttagaatcagcttttagagaaattttccctgttgaatct
tctaatggagatatcaagttagaatatgtagcttatgagttacatgaagctgaaccacca
ttaaatgatgaacttgagtgtaaaaaaagaggtaagacttactcagcttccttaaaagtt
agattaagacttataaataagaaaagtggaaatgagatacaagagtcattggtatatttt
ggagagatacctttaatgactgaaagaggaactttcgtaataaatggtgctgaaagagtt
gttgtatcacaattacatagatcaccaggtgtatcatttaataaagagataaatattcaa
actggtaaagacctattttcaggaaaaattattccttataaaggaacttggcttgaattt
gaaactgacaagaatgatttcctaagtgttaagattgacagaaagaaaaaagtattagca
actgtattcttaaaggctattgatttttttgagaacaatacagaaattaaagattacttt
ttagaaacaaaggaattagaattaactcctatattccaaaaatataaaaatagagaagag
ttagtaagtgttcttagaacaaaatttgaaggaagtttcatcaaagaagatatctatgat
gaagaaactggagagataatagctgaagtagatgcagttattgacgaagctttaattgaa
actataatagatgctaaagtagataaagttgtttattgggaagttaaaccagaagataaa
ttattagcaaatacagtattaaatgatactacattaacaaaagaagatgcagtaactgaa
gtatttaaaaagttaagaccaggagatttagttactatagaatcagctaaatcacttatt
agacaaatgtttttcaaccctcaaagatatgaccttgagccagttggaagatataagatg
aataaaagacttaagttaaatgtacctgatgatgagatacttttaactaaagaagatatc
atagctacaatgaagtatgtaattaacttaaataatggaaatggacatactgatgatata
gataatctatcaaatagaagggtaagaggagtaggagagttacttttaatgcaaattaaa
gctggactttctaagatgggaaaaatggtaagagagaaaatgactattcaggactctgaa
acattaactccacaatctcttttaaatactagaccattaaatgctttaatattagatttc
tttggttctggtcaattatctcagttcatggaccaatcaaatccattatctgagttaact
cataagagaagaatttcagctttaggacctggaggactttcaagagaaagagcaggattc
gaggttagagacgtacatgactctcactatggaagaatctgcccaatagaaacaccagag
ggaccaaacatcggtcttattggatcattagctatctatgctaaaatcaataaatatgga
tttatagaaactccttacattaaagtagtagatggaaaagctgattttgatagaatcgag
tacttagcagctgacgaagaagaaggattatttattgcccaagctgatactaaaattggt
gaaaacaacgagcttttaggagaggttgtttgtagatttggacatgaaatagtaaatata
acaggagaaaaagttgattacttagatatttctcctaaacaagtggtatctgtatctgca
ggattaattccattccttgagcatgacgacgccaacagagcactgatgggatcaaacatg
caaaggcaagcagtaccattattaagaacagaagctccttatattggaacaggacttgaa
agaaaagttgctgtagattctggagcattagtagtatctaaagtagatggaaaagtagtt
tatgtagatgctagtaaaattattatagaagatgaaaatggaaaagaacataagtataga
ttattaaattatgaaagatctaatgcttcaatgtgtttacatcaaactccattagtatca
ttaggtgaggaagtaaaagtaggaagtatacttgctgatggacctgctacaaaaggtgga
gacttagcactaggaagaaatattcttatggcattcatgccttgggaaggatataactat
gaggacgctattttaatttctgatagattaagaaaagatgatgtatttacatcaattcat
atagaagagtatgaaatagaagcaagaaatactaaattaggtgatgaggaaatcactaga
gagatccctaatatctctgaagaagcattaagaaaattagatgctaatggtatcataact
attggttctgaagtaggaccaggagatatcctagtaggaaaaactgctcctaaaggagaa
actgaaccacctgctgaggaaaaattattaagagcaatatttggagaaaaagcaagagat
gtaagagatacatctttaagaatgcctcatggttcaaaaggaacagtagtagagattctt
gagttatcaagagaaaatggtgatgaactaaaagctggtgtaaataaagctataaaaata
ttagttgcagaaaaaagaaaaatcactgttggagataagatgtcaggacgtcacggaaac
aaaggggttgtatcaagagtattaccagcagaagatatgcctttcttagctgacggaaca
cacttagacgttgtacttaacccactaggagtgccatcacgtatgaacataggacaggta
ctagaggttcacttaggaatggctatgggtaactataatggtggaacacatatagcaact
ccagtatttgatggagcatctgaagagcaagttaaggattatttagaaaaattaggattc
cctagaagtggaaaagttgacttatacgatggaagaacaggagataaatttgataatcct
gtaacagtaggaagaatgtatatgttaaaactacaccacttagttgaagataagatgcac
gcaagagcaattggaccatattcattagtaactcaacaaccactaggaggaaaggctcaa
ttcggaggacaaagacttggagaaatggaagtttgggcattagaagcatatggagcatct
aatatacttcaagagatgttaacagtaaaatcagacgatgttactggaagaacaaaaact
tatgaagctatcataaaaggtgaagagatgccagaagcagacttaccagaatcatttaaa
gtattattaaaagagttccaagcactagcattagatgtagaactatttgatagtgaagat
aatataataaacgtagatgaagagttaaataaagaagaggtattaacagagtactctcct
ttagatgactttaaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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