KEGG   Ferrovum myxofaciens: HO273_07930
Entry
HO273_07930       CDS       T06614                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
fmy  Ferrovum myxofaciens
Pathway
fmy02020  Two-component system
fmy02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:fmy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HO273_07930
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    HO273_07930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fmy03021]
    HO273_07930
Transcription machinery [BR:fmy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HO273_07930
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 HTH_23 HTH_IclR Xre-like-HTH
Other DBs
NCBI-ProteinID: QKE38663
Position
complement(1699525..1700940)
AA seq 471 aa
MKVQLQLKQTTQLSLTPQLQQSIRLLQLSTQELEQEVEEFLRLNPLLERADGKDGAVDSE
PGAFETADHIETAEPTSSAEIEQESWNFEEGSGIGLGGQGEDEDEGIQDLRVIPLSLRDH
LLGQVRLMPLEERDQELVATLIDYLDEDGYLRHSFIDLNSSVSDALGEVEESEWLVALRI
LQSLDPAGIGARTLSECLELQLLASHATEEDKRLGKKLLDHLEWLAQREYTRLRRALGIE
ERKVRELQQMLLHFDPRPGAAFSTAETRYVVPDVIVRRTERGWSVSLNEGVMPRLRVNQV
YANILKKGVPGHSMSQQLQEARWLIKNIQQRFDTILRVACAVVERQKDFLERGEVGMKPL
VLREIAEVLGLHESTISRVTVQKYLLTPRGLFELKYFFSSHVGTDSGEAASSTAVRALIR
QLINQEDIKSPLSDQRIANLLGERGFQVARRTVAKYREAMHLPAASLRKSL
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgaaggtccagctccaactcaagcaaacgacgcaactctccctgacgccgcagttgcag
caatcgattcgattgttgcaactctctacccaggagttggaacaggaagtcgaagaattt
ctccggctcaatcctctgctggaacgtgccgacgggaaagatggtgccgttgattcagag
cccggcgcgtttgaaactgcagaccacattgaaacagcagaacccacctcttctgccgaa
atcgagcaggaatcctggaatttcgaagaaggaagcggcatcggattgggggggcagggc
gaagatgaggatgaggggatacaggatctgcgtgtaattccactgtccctgcgcgatcat
cttctggggcaggtacgtctgatgcccctcgaggaacgggatcaggaactggtggccaca
ctgatcgattacctggatgaagacggttacctgcgccattccttcattgatctgaattcc
agtgtatccgatgcgctcggagaggtagaagaatcagagtggctggtggccctgcgcatt
ctgcaatccctggatcccgcggggattggggcgcgtaccttgagcgagtgcctggaactg
caattgttggccagccatgcgaccgaggaggataaacgactgggcaaaaaattgctcgat
caccttgaatggctggcacaacgggaatacactcgtctgaggagagctttgggcatcgag
gaacgcaaggtcagggaattgcagcagatgttgttgcacttcgatcctcgtccgggggcg
gcgttcagtacagccgaaacccgttatgtcgtgcccgatgtgattgtaagacggacggag
cggggttggagtgtatcgctgaatgagggagtaatgccacgtctgcgcgtcaatcaggtc
tatgccaacattctcaagaaaggggttccgggtcactccatgtcccaacaacttcaggaa
gcacgttggttgatcaagaatatccagcaacgttttgacacgattttacgggtggcctgt
gctgtagtcgagcgacaaaaagattttctggagcggggtgaggtcgggatgaaacctctg
gttttgcgcgaaattgctgaagtgttgggactccatgaatccactatttcgcgcgtgact
gtccagaagtatctgttgactccgcgcggtttattcgaattaaaatatttcttcagcagc
catgtggggacggacagtggcgaagcggcttcctccaccgctgttcgtgccctgatccgt
caattgatcaatcaggaagatattaaaagtcctctgtccgaccagcgtattgcgaatttg
ctgggcgagcgggggttccaggtggcaaggcggaccgtggccaagtatcgtgaggccatg
catcttcctgccgccagtttgcgcaagtcgttgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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