KEGG   Formosa sp. Hel1_33_131: FORMB_10820
Entry
FORMB_10820       CDS       T04465                                 
Name
(GenBank) recombinase RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
for  Formosa sp. Hel1_33_131
Pathway
for03410  Base excision repair
for03430  Mismatch repair
for03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:for00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    FORMB_10820
   03430 Mismatch repair
    FORMB_10820
   03440 Homologous recombination
    FORMB_10820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:for03400]
    FORMB_10820
DNA repair and recombination proteins [BR:for03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     FORMB_10820
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     FORMB_10820
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FORMB_10820
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: AOR28129
UniProt: A0A1D7XY75
Position
complement(1163142..1164833)
AA seq 563 aa
MRWTLKPKPDTKKIADLASKLGVDRAISELLLQRGIENFEDAKTFFRPSWSDLHDPFLMK
DMDKAVARIEAAIKSNEQVLVFGDYDVDGTSSVALMASYLETKSTQISTYIPDRYEEGYG
VSYKGIDFASDNDFSLIIALDCGVKAIEKVAYAKKKGIDFIICDHHRPGKELPDAVAILD
PKRPDCEYPFKELCGCGVGFKLIQALASKEGIPVESLVGYLDLVATAIGADIVPIVGENR
ALAYFGLQVINTNPRPGFKALINQMKKEVLTITDVVFNIAPRINAAGRMKHGNYAVALMK
EMSFENAETAASEIELFNTNRREADKRITQEALLQIEESNETEDATSVVYQEDWHKGVIG
IVASRLIETHYRPTLVFTKSGDFLAASARSVRGFDVYHALENCSHLLEQFGGHMYAAGMT
IKEENYSAFKAAFEAEVSATLPVHLRTPEIKIDAEIDFDAITPKFYRILKQFAPFGPQNM
SPVFMSSEVLDTGYGKCVGEDQTHLRVTLAQKGSSKIVGIGFGMGSDLPIVKSKTPFKVV
YSIDENEWNGRVSLQLKLKGIKS
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgcgttggacgctcaaaccgaagcccgacaccaaaaaaatagccgatttagcctctaaa
ttaggcgtcgatagggcgatttcggagctgttactccaaagaggtattgagaattttgaa
gacgctaaaaccttttttcgaccgagttggtccgatttgcacgatccctttctgatgaaa
gacatggacaaagcagttgccagaatcgaagccgctataaaaagcaacgaacaggtatta
gtatttggagattatgatgtggacggcacttcttccgttgctttgatggcgtcctattta
gaaaccaaaagcactcagatttccacctatattcccgaccgttatgaagaagggtatggc
gtatcctacaaaggaattgacttcgcgtcagacaacgatttctcgttaataattgcctta
gactgcggagtcaaagcaattgaaaaagtggcctatgcaaagaaaaaaggcattgacttt
atcatctgtgaccatcaccgtccagggaaagaattgcccgatgcggtcgctattttagac
ccaaaacgtcccgattgtgaatacccttttaaagaactttgtggatgtggtgttggattt
aaattgattcaagccttggcatctaaagaggggattcctgtagaatctttggtagggtat
ttagatttagtagctacagcaattggtgccgatatagttcctattgttggcgaaaataga
gctctcgcttattttggcttgcaagtcattaataccaatccacgcccagggtttaaagcg
ctgatcaatcagatgaaaaaggaggtgctcaccatcactgatgttgtgtttaatattgca
ccgcgcatcaatgctgcaggacgtatgaaacatggcaactatgccgtggctctgatgaaa
gaaatgagttttgagaatgcagaaacagcagctagcgaaatagaactttttaataccaac
cgtcgcgaagcggacaagcgtatcacacaagaagccttgttacaaatagaagaatcaaac
gaaacggaagatgcgacttcggttgtatatcaagaagattggcacaaaggcgtgattgga
attgtagcctcccgattgatagaaacccattaccgccccactttggtatttaccaaaagt
ggcgactttttagcagcttccgcacgatctgtcagaggatttgatgtgtaccatgcctta
gaaaattgcagccatttattagagcaattcggagggcatatgtatgccgcaggaatgact
attaaagaagaaaattattcagcctttaaagccgcttttgaagctgaggtttcagcaacc
ttgcctgtacaccttcgaacgcctgaaataaaaattgatgccgaaattgattttgatgcc
atcacaccaaagttttatagaatcctaaaacaattcgctccctttggacctcaaaatatg
tcacccgtttttatgagttcagaagtactggatacaggctacggaaaatgtgtgggtgaa
gatcaaacgcatttacgggtcacactcgctcaaaaaggcagctccaaaattgtagggatt
ggctttggcatgggaagtgatttaccgattgttaaatctaaaactccctttaaggtggtc
tattctattgatgaaaacgaatggaatgggcgtgtgagtttacagttaaaattaaaaggc
attaaatcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (121)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (131)   

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