KEGG   Francisella philomiragia subsp. philomiragia ATCC 25017: Fphi_1213
Entry
Fphi_1213         CDS       T00652                                 
Name
(GenBank) Exoribonuclease II
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
fph  Francisella philomiragia subsp. philomiragia ATCC 25017
Pathway
fph03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fph00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Fphi_1213
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fph03019]
    Fphi_1213
   03016 Transfer RNA biogenesis [BR:fph03016]
    Fphi_1213
Enzymes [BR:fph01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Fphi_1213
Messenger RNA biogenesis [BR:fph03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Fphi_1213
Transfer RNA biogenesis [BR:fph03016]
 Prokaryotic type
  tRNA degradation factors
   Fphi_1213
SSDB
Motif
Pfam: RNB S1 RNase_II_C_S1 Ras OB_RNB
Other DBs
NCBI-ProteinID: ABZ87438
UniProt: B0TXI0
Position
1321415..1323715
AA seq 766 aa
MSKYNIHNDPNKDLEAQKYENPIPSREVILNYIRDTNIPVSIENIANALEIFKKNLFDGL
VNRLGAMVRDGQLEKDRSYYSLPEIAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQA
KMVMVGDEVTAKVLGLNKRGRIDAEIQTIVSRAQKTITGYYYKSFDCDFIKPVSKSMTSD
IVLLPPKQKIEHNSLIEAEIIVYPSINSVAVAKFKQEVEAVSPVKEAMMMATQKYDLIEQ
WSKKTLRYLDDISDDVIVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAI
ADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNI
SKEGKLSRYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLYELYKVLH
QARQERGAIDFDTVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRPDYDDIQ
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGGADY
KPSELANICENASDQERNADGASKQVENWLKCYFMQDYIGHVLEAQIKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLDRIHIDFEL
YDPRKPFVEGSSNKSFSKKAKKPAKKAKKNKSRRKRKSKTKVKVTE
NT seq 2301 nt   +upstreamnt  +downstreamnt
gtgagtaaatataatatacataatgatcctaataaggatcttgaagcacaaaagtacgag
aatccgattccaagtagagaagtaatcctaaattatataagagatactaatattcctgtt
agtatagaaaacatagcaaatgctttagagatatttaaaaaaaatctttttgatggtctt
gtaaatcgtttgggtgcaatggttagagatggccagttagaaaaagatagatcatactat
agtctgcctgaaatagcaccgatatatatcacatctaaagtgacagctgatagagattct
cgcttagagctgtttagtcacactctaaatactaaggtgggtatagtctctcatcaagca
aaaatggtaatggttggtgatgaagtaactgcaaaggtactaggacttaataaacgtggt
cgtatagatgcagagattcaaacaatagtttcaagagcacaaaaaactatcacaggatat
tactacaagagctttgattgcgattttattaagccggtaagtaagagcatgacaagtgat
atagtgctattacctccaaagcaaaaaatagaacataattctttaatcgaagctgagatt
attgtttatcctagtataaatagtgtagctgttgctaaatttaaacaagaggtcgaagca
gtatctcctgttaaagaagcaatgatgatggcaacgcagaaatatgatttaattgagcag
tggagtaaaaaaactttacgctatttagatgatatttctgatgatgtaattgttggtaat
agagttgatttacgtaatgagaactttgtaactattgatggtgaagatgccaaagatttt
gatgatgctgtctatgcatataagactaaaagtggtagctggaagttatatgttgcaatt
gcagatgtatcaaactacgttgagaaagattctagtttagatttagatgctaagcgtcgt
tcgacttctgtttatttccctgggtatgttattccaatgctaccagagaagttatcaaat
ggattgtgttcgttgaagcctaatgaagatagatattctttagtttgtgagatgaatatt
agtaaagagggtaagctatctagatataagttctattctgctgtcataaactcaaaggcg
cgtttaacttatacagaagtcgcaaagcttatagagaagaaacaaaacacaatagttgaa
aaaactcctgaattggtgcctaatatctttgatttgtatgagttatataaagtacttcat
caagctaggcaagagcgaggtgctatagactttgatacagttgaaacacaaataatattg
aatgatcataatcatattgaatcaatagtgccaagacatcgtaatgatgcgcacaggctt
atagaagaatgtatgcttgtagcaaacgttgctgcggctaaatttactattaagcataaa
aaaacatcgccatttagagttcatagtgagcctaaagaagataggatggaaactctcaag
aagtatcttgccaagcatggtatacatcttgcttatggtaaaaatggcaaagttacacca
aaagctttagcagaaatgctagatagtataaaagatcgtcctgactatgatgatatccag
atgatgactttacgtagtatgaatcaagcagtgtacagtataaataatgatggacacttt
gggttagcatatagtgagtatacacatttcacatcaccaattcgtagatatccggattta
gtggtacacagaataatcaaatcaattattggtgaatatgagcatggtggagctgattat
aaaccttctgaattagcaaatatttgtgagaatgcttctgatcaagagcgaaatgctgat
ggtgcatcaaaacaagttgagaactggttgaaatgttatttcatgcaagattatattggt
catgttctagaggctcaaatcaagcatgtaaatggcttaggtttatttgctgagttaaag
gatatgtatatagaaggattgatacatgtttcggcgattccaggggattattatatttat
gatgaagcaaaagatatattaattggtaagagaactcataaggtttataagataggtcaa
gatataactgtaagagtcgtgagagcagatcttgatagaattcatatagactttgagtta
tatgatccgcgtaaaccttttgttgagggtagctcaaataagtcatttagtaaaaaggct
aaaaaaccagctaaaaaggctaaaaagaataaatcaagacgtaaaagaaaaagtaaaaca
aaagtaaaagtaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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