KEGG   Francisella philomiragia GA01-2801: LA02_698
Entry
LA02_698          CDS       T03621                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
fpj  Francisella philomiragia GA01-2801
Pathway
fpj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fpj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LA02_698 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fpj03021]
    LA02_698 (rpoC)
   03400 DNA repair and recombination proteins [BR:fpj03400]
    LA02_698 (rpoC)
Enzymes [BR:fpj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LA02_698 (rpoC)
Transcription machinery [BR:fpj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LA02_698 (rpoC)
DNA repair and recombination proteins [BR:fpj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LA02_698 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: AJI57478
Position
666443..670693
AA seq 1416 aa
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEASMGA
EAIRDLLADTDLETEIESLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSNYDDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPENKEAKVEEAEKEIK
HITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVMVNGENKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVEILDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKDGQNIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKGVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVVDEKG
NELKSISLAVGAVLNVTDDSVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEILDKSGHIAEEILLPKSRHLVVFDGEQVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKATILDEGDS
KFVKDESIELVRILEENDRLAKEGKRLVEYELTLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDQLRGLKENVLIGRLIPTGTGLAVRKESNKIEKMREELGVEDNMIFTEASS
FNTEDTLFENQIEKEDKDINDDIEESLRNALESLDF
NT seq 4251 nt   +upstreamnt  +downstreamnt
gtgaataacggtatcctacatcaaaactacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggtcattcgttcatggtctcatggtgaagttaaaaaaccagaa
actataaattatagaacattcaaaccagagagagatggattattctgtgctaaaatcttt
ggtccaataaaagactacgaatgtttgtgtggtaagtataaaagacttaagcatcgtggc
gtagtatgtgagcgttgtggtgttgaggtagagcaggccaaagtacgtagagaaagaatg
ggtcatatagatttagtgtgtccagtagtacatatatggtatctaaaatctttgccttct
agaataggtctgtttcttgatatgccattaaagaatgttgagaaggttctatactttgaa
tcttacatagttacagatccaggcatgactccactagagaaaaaacagcttcttactgat
gatgagtatgctgaagctctagagaactatggttatgagtttgaagcatctatgggtgca
gaagctataagagacttattagcagataccgatcttgaaactgaaatagagtctctacaa
gccgaatatgaagagagtaaatctacagctaaaaaagaaaaagctattaagagattaaga
cttcttgaaactttccaagcatctggaaataagcctgagtggatggtaatgactgtatta
ccagttttaccaccagatttaagaccattggttccaattgaaggtggtagatttgcaaca
tctgatcttaacgatttatatcgtagagtaattaatagaaacaatagacttaaaaaacta
ttggatctaaatgctccagatattattgttagaaatgaaaagagaatgttgcaagaagct
gtagatgcgttactagataacggtagacgtggtagggctgtaacaggttcaaataagcgt
ccacttaagtctcttgctgatatgataaaaggtaagcaaggacgtttccgtcagaacttg
cttggtaaacgtgtagactattctggtcgttctgtaattacggttggtccatctctaaga
ttgcatgagtgtggtttacctaagaagatggcattagagctatttaagccttttgtatac
tctaagttaagattaggtggttatgcaacaactatcaaacaagctaagagaatggttgag
cttgaagaagctgttgtatgggatattttagaagttgttattaatgagcatcctgtatta
ctaaaccgtgctccaacacttcatagacttggtatacaggcattcgaacctaagctaatc
gaaggtaaggcgatacagctacatcctttggtttgtgcggcatttaacgccgatttcgat
ggtgaccaaatggctgtacacgtaccattaactgtagagtctcaattagaagctagagta
ttaatgatgtctacaaacaacatcttatctccagcatctggtcagccgattatcactcct
actcaagatattgtactaggtttgtactacattactagagagaaagaaggcgctcgtggt
gaaggaaaactattctcaaactatgatgatgtaagtagagcatataactctggcactata
gatattcatgctaaaattaagcttagaatagatagacaagtttttgatactaaaggcaat
acttataatgagaagggggttgtaaatactactgttggtagagctctacttcttaatata
ttgccagaaggtttgtcattctcattattaaataaagtacttgttaagaaagaaatttct
aagattattaatcaagcatttagagtgctaggtggtaaggcgactgtagttttagcagat
aaactgatgtatgcaggttttaaatattcgacattatcaggtgtttctgtaggtgttgat
gatatgacaatacctgaaaataaagaggctaaagtagaagaagcagaaaaagaaattaag
catattacggagcagtatcaatcttcactaattacagagaatgaaagatataataatatc
atcaatatttggagcaaaacttcggatgaggttggtgcttcgatgatggatgcgatttca
aaagatactgtaatggtaaatggtgagaataaagaaatcgaatcatttaactctgtatat
atgatggcaaaatcaggggcaaggggttcttataaccagatgaggcagcttgcaggtatg
cgtggtttaatggctaagccagatggaacgatgattgaaactgctattactgcaaacttt
agagaaggcttgtcagtattgcagtactttacatctactcacggtgctcgtaaaggtcta
gcagatacagcattgaagacagctaacgctggttacctaactcgtagacttgtggatgtt
gcccaagatttagttgttatcgaagaagattgtggtactgatgatggtttaatgttctca
gctattgttgaagatggcgaagttaaagttcctctagtagagagagctttaggtagaaca
ttagctgctgatgttgtgactgaaaagggagttgttttattagaagctggtactctactt
gatgaaaatcttgttgagatacttgacgataatggtattgacatgattaaggttagatct
ccaattacatgtaaaactcgtagaggcttatgtgctaaatgttatggtcgtgaccttgct
cgtgaaagaaaagtcaatgtcggtgagtctgttggtgtaattgctgctcagtcaattggt
gagccaggtacacagcttacgatgagaacattccatactggtggtgcggcatcattaggt
attacagtatctgatattaaagttaagactgctggtaagattaagttcaaaaacatcaga
acagttacaaataaagatggtcaaaatatagttatatcaagagctggtgaaattatagtt
tctgatactatgggccgtgttagagagcaacataaaatccctatgggtgcggttgttcct
ttagcaagtggtaagggtgttgagattggcgatgttatagctacttgggatccgcatgct
caaccattgattactgatgttgctggtaaagttgttttagaagacgttattgatggtatt
acatcaaagcatacatatgatgatttaactggtcagcaaactattgagataacttcaata
tctcaaagaacaacctctaagaacttaaagccagttgttaaagttgttgatgaaaaaggc
aatgagcttaaatcaatttcattagctgtaggtgctgtattgaacgttactgatgattca
gtattagaggttggtgatgttgttgctaagattcctttagaaggatctaagaataaggat
attacaggtggtcttccacgagttgctgaactttttgaggctagacgacctaaagatgct
gcaatattatcgccttgcgatggtatggttagattgggtaatagagatactaaagaaaag
caaaggattgaaatcttggataagagcggtcatattgctgaagagatactattgcctaaa
tctagacatctagtagtttttgatggcgagcaggtatctaaaggcgacgtattagccgat
ggtcctactgatccacatgatcttcttaagtataaaggtttagaagcgtttgctgactat
atcttgattgaagctcaatctgtatatcgtatgcaaggtgttgtaattaacgataagcat
attgaaacgatcgttagacagatgttaagaaaagcaacaattcttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgaattagtaagaatacttgaagaaaatgataggcta
gctaaagaaggtaagagattggttgagtatgagcttactctaatgggtatcactagatca
tctttatctacggagtcattcttgtctgcagcatcgttccaagaaacgactagagtatta
actgaggcttcgatacattctcaagttgatcaattaagaggacttaaagaaaacgttctt
attggtagactaatacctacaggtacaggtttagcggttagaaaagagtctaataaaatt
gagaagatgagagaagagctaggtgtagaagataatatgatattcacagaagcatcatca
tttaacactgaagatactctctttgagaatcagattgaaaaagaagataaagatattaat
gatgatattgaagagtcattaagaaatgctttggaatctttagatttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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