KEGG   Flavobacterium psychrophilum v4-33: IA06_03545
Entry
IA06_03545        CDS       T03661                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
fpk  Flavobacterium psychrophilum v4-33
Pathway
fpk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fpk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IA06_03545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fpk03021]
    IA06_03545
   03019 Messenger RNA biogenesis [BR:fpk03019]
    IA06_03545
Transcription machinery [BR:fpk03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IA06_03545
Messenger RNA biogenesis [BR:fpk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IA06_03545
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 AAA_25 NACHT AAA OB_RNB
Other DBs
NCBI-ProteinID: AIG40937
UniProt: A0A075S6P4
Position
782667..784418
AA seq 583 aa
MFDISVLKEMKLPELQEIAKVAKIAKFKTLKKDELVYQILDYQAANPEKIAPIATETISV
IDEKPKRARVVEAKEAKPIVSKKVIAKPPVQQEVITFEEPKAQTTPELEKPVVEAIQKQR
APKVIRFTKDENNVTKVDNSHRNKKIVKPVIVPANTEEGVSEILENPETVQKEKSSNPNQ
NQKKPQERKRADEVNQNPNAKNKNNFREPDYEFEGIIESEGVLEMMPDGYGFLRSSDYNY
LASPDDIYLSTSQVRLFGLKTGDTVKGVVRPPKEGEKYFPLVRVLKINGHDPQVVRDRVS
FEHLTPIFPTEKFRLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKEIANAI
AANHPEVYLIVLLIDERPEEVTDMQRSVRGEVVASTFDREPQEHVKIANIVLEKAKRLVE
CGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNVENGGSLSI
IATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDEK
TIQRMWIMRKYLADMNPVEAMEFINDRFKKTRNNEEFLISMND
NT seq 1752 nt   +upstreamnt  +downstreamnt
atgtttgatatttctgttttaaaagaaatgaagctccctgagctacaagaaattgcaaaa
gttgctaaaattgcaaaattcaagacgttaaaaaaagacgaacttgtttaccaaatatta
gattaccaagctgcaaaccccgaaaaaattgctccaattgcaaccgaaactatttctgta
atagatgaaaagccaaaaagagctagggttgtagaggctaaagaagcaaaaccaattgtt
tcaaaaaaggtaattgcaaagccaccagttcagcaagaagtaattacttttgaagagcct
aaagcccaaacaactccagaattagaaaaaccagttgttgaagccatacaaaagcaacgt
gcgccaaaagtaattcgatttacaaaagacgaaaataatgtgactaaggttgataattca
catcgaaataaaaaaatagtaaaacctgtaattgtccctgcaaatacagaagaaggagtt
tctgaaattttagaaaatccagaaacggttcaaaaagaaaagtcttcaaatccgaatcaa
aatcagaaaaagccacaagagcgaaagcgagctgacgaagtaaaccaaaatccaaatgca
aaaaacaaaaataattttagagagccagattatgagttcgaaggaattatagaaagcgaa
ggtgtactagaaatgatgccagacggttatggttttttgcgttcttcagattataattat
ttagcctcaccagatgatatttatttatcgacctcgcaagttcgattatttggtttaaaa
acaggagatactgtaaaaggcgtagttcgtccgccaaaagaaggcgaaaaatatttccct
ttagtaagagtactaaaaataaacggacatgatccgcaagtggttagagacagagtttct
ttcgagcacttgaccccaatattcccaacagaaaaatttcgcttggccgaaaaaggaagt
tcaatttctactcgtattatcgatttgttttctccaataggaaaaggacaacgtggtatg
atagtcgcacagccaaaaacaggtaaaacgatgttgcttaaagagattgctaatgctatt
gcagccaatcatccagaagtatatttaattgttttattaatagacgaacgcccagaagaa
gttacagatatgcaacgtagtgtgcgtggcgaagtagtagcttctacctttgatagagag
ccgcaagaacacgtaaaaattgccaatattgtgctagaaaaagcaaaacgtttggtcgaa
tgtggtcatgatgtagtcatactattagattcgattacacgtttggcaagagcttataat
actgtgcaaccagcttctggaaaagtattaagtggtggtgtagatgccaatgcgttgcaa
aaaccaaaacgttttttcggagcagctcgtaatgtagaaaacggtggctcgttaagtatt
attgcaacagcacttacagaaacgggttctaaaatggacgaagttattttcgaagaattt
aaaggaactggtaatatggaattgcaattggatcgtaaaattgcaaaccgtcgtattttt
ccagcaatagatttaacatcatctagtacacgtcgtgatgatttattactcgacgaaaaa
acaatacaacgcatgtggattatgcgtaaataccttgcagatatgaatcctgtagaagct
atggaatttataaatgaccgatttaagaaaacaagaaataacgaagaatttttaatttcg
atgaatgattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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