KEGG   Francisella philomiragia O#319-036: LA56_46
Entry
LA56_46           CDS       T03618                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpm  Francisella philomiragia O#319-036
Pathway
fpm03410  Base excision repair
fpm03430  Mismatch repair
fpm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fpm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LA56_46 (recJ)
   03430 Mismatch repair
    LA56_46 (recJ)
   03440 Homologous recombination
    LA56_46 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpm03400]
    LA56_46 (recJ)
DNA repair and recombination proteins [BR:fpm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     LA56_46 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     LA56_46 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LA56_46 (recJ)
SSDB
Motif
Pfam: RecJ_OB DHHA1 DHH
Other DBs
NCBI-ProteinID: AJI56050
Position
complement(50322..52064)
AA seq 580 aa
MLIRQKQTNQDILSTLLSKGYDLFLARIISSRVSNFENIDLILKGSIKDLSSPFLFKDID
KAVDRLFQALQNNEVIGLETDHDCDGQTSHAILYEALTKIFNYPKDKIRSYIGHRMLEGY
GLSESLMNRILTDSTRPNLIITADNGSTDEPRIAVLKQNGIDIIVTDHHGIPPEGAPKSA
IAVLNPTQHDCNYPDKAIAGCMVAWLFMTALRRKYLQNGKSLSKSYGLSNLLDFVAIGTV
ADCVSMANSHNNRIVTKLGIEQLKNNDRLCWDFLDKEKLSSEYISFSIAPLLNSDGRVSD
ALGSVSFLLENDERKIEETYENLTKQNNQRKEIQKKLTHEAITKAHQLDNNNNSLCILLN
DGHSGIHGITASRVKEMFGKPVIIFSETQNDPNLISGSARSVDSINIKTILDTIALKSPA
LMIKYGGHKGAAGLTINKSDFDTFYDLFESEIINFIKNDSISLEPILEYDFELDENDFKL
QTLEKIESLEPFGREFEKPLFYNSFTIENLRLVGKDKNHAQLILRYKNIPSIKAIWFNAL
ENKIIEQIGIGDTIRACYELQKEEFLGQTNLSLNIKLIEK
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgttaataagacaaaaacaaactaatcaagatatattatctaccctattatcaaaaggt
tatgacttatttttagcacggattatctcttctagagtaagtaattttgagaatattgat
cttatactaaaaggctctataaaagatctatcatctccatttctattcaaagatattgat
aaagctgttgatcgactttttcaagcattacaaaataatgaagttattggattggaaact
gatcatgactgtgatggtcaaacatctcatgcaattttatatgaagctctgacaaagata
ttcaattatcctaaagataagattcgctcatatataggacatagaatgctagaaggatat
ggtctgtctgagtctctgatgaatagaatattaacagacagtactagaccaaatcttatc
ataacagctgataatggttcaacagatgagcctaggattgctgttcttaaacaaaatgga
attgatattatcgtaactgatcaccatggtattcctcctgagggagcgcctaaaagtgct
atcgccgtactaaaccctactcaacatgattgtaattatccagacaaagctatagctggt
tgtatggttgcttggctttttatgacggctcttcgtagaaaatatctgcaaaatggtaaa
tcattatctaagtcttatggattaagtaatttacttgattttgttgcaattggtacagtt
gcggattgtgttagtatggcaaatagtcataataaccgtattgttacaaaactaggtata
gagcaacttaagaataacgatcgtctatgttgggacttcttagataaagagaaactatca
agtgagtatattagtttcagtatagctcccttgctaaatagtgatggaagagtttctgat
gcactagggtctgttagctttttgcttgagaatgatgaacgcaaaattgaagaaacgtac
gaaaacctaactaagcaaaataaccaacgtaaagaaattcaaaaaaagcttactcatgaa
gcaataaccaaagcacatcaattagacaataataacaactcattatgtatactacttaat
gatggtcattctggaattcatggtattacagcaagtagagtcaaagaaatgtttggtaag
cctgtgattattttttctgaaacacaaaatgatcctaacttaatatcaggttctgctagg
agtgtagatagtattaacattaaaacgatacttgatactatagcacttaaatcgcctgct
ttaatgataaaatatggtggtcataaaggtgctgctggcttaacaataaacaaatctgat
ttcgatactttttatgatttatttgaaagtgaaattatcaatttcattaaaaatgacagt
atatctttagagcctattttagagtatgattttgaacttgatgaaaatgatttcaaacta
caaactctagaaaagatagaatctcttgaaccatttggtagagaatttgaaaaaccacta
ttttacaacagttttactatagagaatctacgtttagttggtaaagataaaaatcatgca
caactaattttacgctataaaaatattccttcaatcaaagcgatatggtttaatgcctta
gaaaataaaataattgaacaaataggtattggcgataccataagagcctgttatgaactt
caaaaagaagaattcctcgggcagacaaacttatctctcaatattaaacttatcgaaaaa
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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