KEGG   Flavobacterium psychrophilum 950106-1/1: IB65_03230
Entry
IB65_03230        CDS       T03412                                 
Name
(GenBank) helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
fpq  Flavobacterium psychrophilum 950106-1/1
Pathway
fpq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fpq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IB65_03230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fpq03019]
    IB65_03230
   03009 Ribosome biogenesis [BR:fpq03009]
    IB65_03230
Enzymes [BR:fpq01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     IB65_03230
Messenger RNA biogenesis [BR:fpq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     IB65_03230
Ribosome biogenesis [BR:fpq03009]
 Prokaryotic type
  rRNA helicases
   IB65_03230
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 PhoH
Other DBs
NCBI-ProteinID: AIT64937
UniProt: A0A8G2G140
Position
complement(716531..717877)
AA seq 448 aa
MNNNPHSNNILLNLGIESLNEMQEVAQDAILNDNNVLLLSPTGSGKTLAFLLPIFEMLQE
NITSVQCLILVPSRELALQIEQVWKKMGTSYKVNVCYGGHSIDTEIKNLSNPPAVLIGTP
GRIADHIDRGTFSVDAIQTLILDEFDKSLQLGFHEQMSFIINRLPKLNKRVLVSATSDIE
IPKYTRVINPTVLDFIPSEEEKTNLLFQLVVSKDKDKIGSLFNLICSLKSESAIIFCNHR
DAAERISDTLNEKGIYATYYHGGMDQDERERALIQFRNGSVSYLITTDLAARGLDIPEMK
HVIHYHLPSKEDEFTHRNGRTARMLATGTAYLVIHESEKKLEYIDYKMPVLEVENSTSLP
KAPEFQTIYISGGKKTKLNKIDIVGFFSQKGKLEKGDLGLIEVKDFISFAAVKSKKVKDL
LNNIRDEKMKGKKFKIEVARKVLKKEED
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgaataacaacccccattccaataatatattgcttaatttaggcatcgaaagtctaaac
gaaatgcaagaagttgctcaagatgctattttgaacgacaataatgttttattactatcg
ccaacaggttccggtaaaacattggcttttttattgccaattttcgaaatgttgcaagaa
aatataacttcagtacaatgtttaattttagtcccatcacgagaattggccctgcaaatt
gaacaagtttggaaaaaaatgggcacttcatataaagtaaatgtgtgttatggtgggcat
tctatagataccgaaataaaaaatttaagtaatccgcccgcagttcttataggaacgcca
ggcagaatagccgatcatatagacagaggaacttttagtgtagatgccattcaaacgtta
attttagatgagtttgacaaatccctacaattgggttttcatgagcaaatgtcatttatc
attaatagattaccaaagctaaacaaacgtgttttggtttctgctacttctgatattgaa
atcccgaaatacacccgagttatcaatcctacggttttagactttatcccttcggaagaa
gaaaaaacaaatttgttgtttcaactggtggtttctaaagacaaggataagattggaagt
ttatttaatttaatatgctcattaaaatcggaatcggctattattttttgcaaccatcgt
gatgctgccgaaagaattagcgatacactaaacgaaaaaggaatttatgccacatattat
catggcggaatggatcaggacgaacgtgaacgagccttaatccagtttagaaacggaagt
gtaagttatttaattactaccgatttagccgctcgtggattggatattccagaaatgaaa
cacgtaattcattatcatttgccctctaaagaagacgaatttacacaccgaaacggtcga
accgctagaatgttagcaactggaacagcttatcttgttattcacgaaagtgaaaaaaaa
ctagaatatatagattataaaatgccagttttagaggtagaaaattcgacttcattaccc
aaagcaccagaatttcagacgatttatatttctggcggaaagaaaacaaaactgaataaa
atagacattgtaggtttcttttctcaaaaaggaaaactcgaaaaaggtgatttaggatta
atcgaagtgaaagattttatttcgtttgccgccgtaaaatctaaaaaagtaaaagatttg
ctaaacaatattcgtgacgaaaaaatgaaaggcaaaaagtttaaaattgaagtagcgagg
aaggtacttaaaaaagaagaggattag

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