KEGG   Flavobacterium psychrophilum 950106-1/1: IB65_09585
Entry
IB65_09585        CDS       T03412                                 
Name
(GenBank) exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
fpq  Flavobacterium psychrophilum 950106-1/1
Pathway
fpq03030  DNA replication
fpq03430  Mismatch repair
fpq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fpq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IB65_09585
   03430 Mismatch repair
    IB65_09585
   03440 Homologous recombination
    IB65_09585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fpq03032]
    IB65_09585
   03400 DNA repair and recombination proteins [BR:fpq03400]
    IB65_09585
Enzymes [BR:fpq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     IB65_09585
DNA replication proteins [BR:fpq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     IB65_09585
DNA repair and recombination proteins [BR:fpq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     IB65_09585
SSDB
Motif
Pfam: RNase_T GIY-YIG DEDDh_C RNase_H_2 GIY_YIG_2 DNA_pol_A_exo1 DUF2430
Other DBs
NCBI-ProteinID: AIT66092
Position
2049483..2050844
AA seq 453 aa
MYAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQFISLVNPEIPIQPFVVKLTGINNAM
LVSAPKFHEVAKRIVEITKDCIIVAHNTVFDYRILRTEFSRLGYDFQAKTLCTVELAKIL
IPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLFKMLLDKDLEKIIVKEQIKTEITK
GIAPKLLNIIESLPNKTGVYYIHKENGTIIFIGKSRNIKKRVNQHFTGITKSALKIQQEV
FTVTYQETGSELIALLKETEEIKRNRPIYNRISPKTHFPVAIYCEKDANGYLNLKLQKFD
GRKKEITAYTSLQEGKNNLFRITSQYNLCQKLTGLYETKTHCFQQKINECDGACIGKITP
QEYNKRVQEFITKSTLENQSIIIIDSGRTTREHSAVLIENGVYKGYAFFDLNYQISNIQI
LKNLITPMPNNRDTRNIIQGYLRKNKVMKIMKF
NT seq 1362 nt   +upstreamnt  +downstreamnt
atgtacgcaatactagacatagaaacaacaggaggacaattcaatgaagaaggaattacc
gaaatcgccatctataaatttgatggtcatcaaatagtagaccaatttattagtttagta
aatcctgaaatcccaattcaaccgtttgtagtaaaacttacgggaataaataatgctatg
ttggtatctgcacccaagtttcacgaagtagccaaacgcattgtagaaatcacaaaagat
tgtataattgttgcacacaataccgttttcgattaccgaattcttcgcacagaatttagc
cgtctaggttacgattttcaagcaaaaacgctatgcacagtcgaactagctaaaatacta
attccagaacaaccctcatatagcttaggaaaattagttcgagcactaggaatcccaata
actaacagacatcgtgccgaaggagatgcactagcaacagtcaaattatttaaaatgctg
ttagacaaagatttggaaaaaatcattgtaaaagagcaaattaaaaccgaaattaccaaa
ggaattgcaccaaaattattaaatattatcgaatccctgcccaacaaaacaggcgtttac
tacattcacaaagaaaacggaactattatttttattggcaaaagcagaaatatcaaaaaa
agagtaaaccagcattttacaggaatcacaaaaagtgccctaaaaatacaacaagaagtt
tttaccgttacttaccaagaaactggaagcgaactcatagcgctactaaaagaaaccgaa
gaaataaaaagaaaccgacctatttataacagaatatcgcctaaaacccatttcccagta
gccatatattgcgaaaaagatgccaatgggtatttgaatctaaaattacaaaaattcgac
ggtcgaaaaaaagaaatcacagcctacacaagccttcaggaaggaaaaaacaatttattc
agaataacatcacaatacaatttgtgccaaaaattaactggtttatacgaaacaaaaact
cactgttttcagcagaaaataaacgaatgcgatggcgcttgtataggcaaaattacgcca
caagaatacaacaaacgagtgcaagaatttattacaaaaagcaccctcgaaaaccaaagc
atcatcattatagacagcggtagaaccaccagagaacacagtgctgttctcatagaaaat
ggtgtatataaaggctatgcttttttcgatttaaattatcaaattagcaatatacaaata
ctaaaaaacctcattacaccaatgcccaacaaccgtgacacccgaaatatcatacaaggc
tatttacgtaaaaacaaagtgatgaaaatcatgaaattttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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